RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_phylum = "Artverviricota"

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tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1067370 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1013219 1013219 PRJNA1067370_P_NODE_19661_length_423_cov_1.962857_g19113_i0 PRJNA1067370 19661 423 1.962857 8.30288511 root 1 Root_unresolved Root_unresolved 776 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g19113 i0 99.764 42.8510638297872 423 1 100 0 1 423 937 1359 Moloney murine leukemia virus, complete genome blastn 18126 776 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
8666505 8666505 PRJNA1067370_P_NODE_69387_length_265_cov_2.442708_g68838_i0 PRJNA1067370 69387 265 2.442708 6.4731762 root 1 Root_unresolved Root_unresolved 484 2.0199999999999998e-132   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g68838 i0 99.623 99.8150943396226 265 1 100 0 1 265 1921 1657 Moloney murine leukemia virus, complete genome blastn 26451 484 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
17591075 17591075 PRJNA1067370_P_NODE_6394_length_703_cov_1.466667_g5886_i0 PRJNA1067370 6394 703 1.466667 10.31066901 Gammaretrovirus 153135 Viruses Viruses 1293 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g5886 i0 99.858 98.6614509246088 703 1 100 0 1 703 3292 3994 Moloney murine leukemia virus, complete genome blastn 69359 1293 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;