RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1067370 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
180572 180572 PRJNA1067370_P_NODE_108061_length_243_cov_0.905882_g107512_i0 PRJNA1067370 108061 243 0.905882 2.20129326 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 298 2.55e-76   NTclustered gi|2874254049|emb|OY970373.1| 171953 g107512 i0 90.95 6.51440329218107 221 20 91 0 2 222 4532139 4532359 MAG: uncultured Acidobacteriota bacterium isolate MFD09368.bin.c.1 genome assembly, chromosome: 1 blastn 1583 298 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
1455170 1455170 PRJNA1067370_P_NODE_100162_length_245_cov_0.895349_g99613_i0 PRJNA1067370 100162 245 0.895349 2.19360505 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 379 8.929999999999999e-101   NTclustered gi|112980856|gb|DQ829660.1| 171953 g99613 i0 95.378 430.465306122449 238 11 97 0 8 245 1060 1297 Uncultured Acidobacteria bacterium clone DON20 23S ribosomal RNA gene, partial sequence blastn 105464 379 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
2731683 2731683 PRJNA1067370_P_NODE_89403_length_248_cov_0.880000_g88854_i0 PRJNA1067370 89403 248 0.88 2.1824 Granulicella tundricola 940615 Bacteria Bacteria 226 1.2499999999999999e-54   NTclustered gi|321161386|gb|CP002480.1| 1198114 g88854 i0 83.265 26.9314516129032 245 41 99 0 3 247 854221 853977 Granulicella tundricola MP5ACTX9, complete genome blastn 6679 226 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella tundricola
6558893 6558893 PRJNA1067370_P_NODE_6106_length_717_cov_2.099379_g5602_i0 PRJNA1067370 6106 717 2.099379 15.05254743 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 1258 0   NTclustered gi|84452200|emb|AM180898.1| 171953 g5602 i0 98.329 126.50069735007 718 11 100 1 1 717 1054 337 Uncultured Acidobacteria bacterium partial 23S rRNA gene, clone LS_LKC22_kan3 blastn 90701 1258 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
18864899 18864899 PRJNA1067370_P_NODE_94795_length_247_cov_0.885057_g94246_i0 PRJNA1067370 94795 247 0.885057 2.18609079 Luteitalea 2004797 Bacteria Bacteria 135 2.15e-27   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g94246 i0 83.448 7.03643724696356 145 24 59 0 78 222 4455751 4455607 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 1738 135 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis
19306714 19306714 PRJNA1067370_P_NODE_79936_length_251_cov_0.865169_g79387_i0 PRJNA1067370 79936 251 0.865169 2.17157419 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 148 2.8199999999999996e-31   NTclustered gi|2874253760|emb|OY969701.1| 2283092 g79387 i0 93.878 2.13147410358566 98 6 39 0 6 103 2745596 2745499 MAG: Pyrinomonadaceae bacterium isolate MFD04212.bin.c.1 genome assembly, chromosome: 1 blastn 535 148 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
23965555 23965555 PRJNA1067370_P_NODE_100819_length_245_cov_0.895349_g100270_i0 PRJNA1067370 100819 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 209 1.24e-49   NTclustered gi|2874253849|emb|OY969905.1| 171953 g100270 i0 82.041 4.36734693877551 245 44 100 0 1 245 759499 759743 MAG: uncultured Acidobacteriota bacterium isolate MFD09222.bin.c.1 genome assembly, chromosome: 1 blastn 1070 209 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
25239533 25239533 PRJNA1067370_P_NODE_5620_length_745_cov_3.194940_g5124_i0 PRJNA1067370 5620 745 3.19494 23.802303 Holophagaceae 574976 Bacteria Bacteria 1160 0   NTclustered gi|2621785467|emb|OY781925.1| 188475 g5124 i0 94.786 207.408053691275 748 34 100 5 1 745 1837638 1836893 MAG: uncultured Holophaga sp. isolate 48fd71e5-2ffc-43bf-b6f5-ca4e00a42c30 genome assembly, chromosome: 1 blastn 154519 1160 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Holophaga uncultured Holophaga sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;