RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1067370 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12934921 12934921 PRJNA1067370_P_NODE_90811_length_248_cov_0.880000_g90262_i0 PRJNA1067370 90811 248 0.88 2.1824 Halococcus dombrowskii 179637 Archaea Archaea 396 9e-106   NTclustered gi|2221489803|gb|CP095005.1| 179637 g90262 i0 95.547 43.2701612903226 247 11 99 0 2 248 866359 866113 Halococcus dombrowskii strain H4 chromosome, complete genome blastn 10731 396 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
21857920 21857920 PRJNA1067370_P_NODE_81098_length_251_cov_0.865169_g80549_i0 PRJNA1067370 81098 251 0.865169 2.17157419 Methanosarcina barkeri 2208 Archaea Archaea 54.7 0.006   NTclustered gi|805384997|gb|CP009517.1| 1434107 g80549 i0 96.97 0.131474103585657 33 0 13 1 67 99 3913505 3913474 Methanosarcina barkeri 3, complete genome blastn 33 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
21858073 21858073 PRJNA1067370_P_NODE_99978_length_245_cov_0.895349_g99429_i0 PRJNA1067370 99978 245 0.895349 2.19360505 Halosimplex aquaticum 3026162 Archaea Archaea 52.8 0.022   NTclustered gi|2446562038|gb|CP118158.1| 3026162 g99429 i0 100 0.114285714285714 28 0 11 0 29 56 3166077 3166104 Halosimplex aquaticum strain XZYJT29 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex aquaticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;