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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 18 ✖

bioproject 1

  • PRJNA1067370 · 18 ✖

analysis 1

  • blastn · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2731626 2731626 PRJNA1067370_P_NODE_81863_length_251_cov_0.865169_g81314_i0 PRJNA1067370 81863 251 0.865169 2.17157419 Micractinium reisseri 532145 Plants Plants 279 9.58e-71   NTclustered gi|297501471|dbj|AB506071.1| 532145 g81314 i0 86.853 5.31872509960159 251 32 100 1 1 251 6359 6110 Micractinium reisseri genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: 2 blastn 1335 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium reisseri
4841336 4841336 PRJNA1067370_P_NODE_67644_length_268_cov_1.579487_g67095_i0 PRJNA1067370 67644 268 1.579487 4.23302516 Eukaryota 2759 Plants Plants 224 4.909999999999999e-54   NTclustered gi|760444278|ref|XM_011400906.1| 3075 g67095 i0 82.824 93.5522388059701 262 33 98 7 1 262 277 28 Auxenochlorella protothecoides Histone H3.1 partial mRNA blastn 25072 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
4841383 4841383 PRJNA1067370_P_NODE_85684_length_249_cov_1.551136_g85135_i0 PRJNA1067370 85684 249 1.551136 3.86232864 Eukaryota 2759 Plants Plants 122 1.69e-23   NTclustered gi|926770371|ref|XM_014038206.1| 145388 g85135 i0 88.889 18.0401606425703 99 11 40 0 14 112 55 153 Monoraphidium neglectum solute carrier family 25 partial mRNA blastn 4492 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
5283651 5283651 PRJNA1067370_P_NODE_36445_length_330_cov_3.105058_g35897_i0 PRJNA1067370 36445 330 3.105058 10.2466914 Chlamydomonas reinhardtii 3055 Plants Plants 165 3.82e-36   NTclustered gi|2082260551|ref|XM_001702928.2| 3055 g35897 i0 81.5 48.8151515151515 200 37 61 0 11 210 356 157 Chlamydomonas reinhardtii ribosomal protein S11 (CHLRE_12g514500v5), mRNA blastn 16109 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5283704 5283704 PRJNA1067370_P_NODE_44985_length_309_cov_2.855932_g44437_i0 PRJNA1067370 44985 309 2.855932 8.82482988 Chloromonas perforata 51730 Plants Plants 56.5 0.002   NTclustered gi|953272850|gb|KT625416.1| 51730 g44437 i0 100 0.0970873786407767 30 0 10 0 247 276 219960 219931 Chloromonas perforata culture-collection SAG:11-43 chloroplast, partial genome blastn 30 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chloromonas Chloromonas perforata
5283721 5283721 PRJNA1067370_P_NODE_47825_length_301_cov_9.732456_g47277_i0 PRJNA1067370 47825 301 9.7324560000000009 29.29469256 Desmochloris halophila 138176 Plants Plants 501 2.31e-137   NTclustered gi|371782086|emb|HE610118.1| 138176 g47277 i0 96.689 66.5182724252492 302 9 100 1 1 301 3693 3994 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 20022 501 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
9108644 9108644 PRJNA1067370_P_NODE_76948_length_254_cov_1.701657_g76399_i0 PRJNA1067370 76948 254 1.701657 4.32220878 Monoraphidium neglectum 145388 Plants Plants 226 1.2799999999999999e-54   NTclustered gi|926779487|ref|XM_014042764.1| 145388 g76399 i0 86.408 23.6968503937008 206 28 81 0 1 206 869 664 Monoraphidium neglectum NADH dehydrogenase (ubiquinone) flavoprotein 1 mRNA blastn 6019 226 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
9108800 9108800 PRJNA1067370_P_NODE_96288_length_246_cov_0.890173_g95739_i0 PRJNA1067370 96288 246 0.890173 2.18982558 Chlorella variabilis 554065 Plants Plants 198 2.7e-46   NTclustered gi|552827548|ref|XM_005847191.1| 554065 g95739 i0 81.405 41.5894308943089 242 45 98 0 4 245 378 619 Chlorella variabilis hypothetical protein (CHLNCDRAFT_134244) mRNA, complete cds blastn 10231 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
11659367 11659367 PRJNA1067370_P_NODE_27670_length_367_cov_1.047619_g27122_i0 PRJNA1067370 27670 367 1.047619 3.84476173 Chlamydomonas reinhardtii 3055 Plants Plants 303 8.71e-78   NTclustered gi|2082247947|ref|XM_001698013.2| 3055 g27122 i0 81.769 58.8801089918256 373 59 100 6 1 367 601 232 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g278222v5), mRNA blastn 21609 303 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
13766603 13766603 PRJNA1067370_P_NODE_54011_length_289_cov_1.120370_g53462_i0 PRJNA1067370 54011 289 1.12037 3.2378693 Chlamydomonas 3052 Plants Plants 254 6.83e-63   NTclustered gi|2082247947|ref|XM_001698013.2| 3055 g53462 i0 85.425 23.757785467128 247 32 85 4 11 255 434 190 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g278222v5), mRNA blastn 6866 254 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14209391 14209391 PRJNA1067370_P_NODE_17172_length_449_cov_2.148936_g16624_i0 PRJNA1067370 17172 449 2.148936 9.64872264 Gonium pectorale 33097 Plants Plants 274 8.53e-69   NTclustered gi|165974599|dbj|AB353888.1| 33097 g16624 i0 79.302 34.3986636971047 401 75 88 8 53 449 84 480 Gonium pectorale EFL1 mRNA for elongation factor-1 alpha-like protein, complete cds blastn 15445 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale
15483969 15483969 PRJNA1067370_P_NODE_9413_length_590_cov_2.827853_g8879_i0 PRJNA1067370 9413 590 2.827853 16.6843327 Chlamydomonas reinhardtii 3055 Plants Plants 309 3.1300000000000003e-79   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g8879 i0 77.18 70.5372881355932 539 117 91 5 55 590 291 826 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 41617 309 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15483980 15483980 PRJNA1067370_P_NODE_95973_length_246_cov_1.335260_g95424_i0 PRJNA1067370 95973 246 1.33526 3.2847396 Chlamydomonas incerta 51695 Plants Plants 215 2.68e-51   NTclustered gi|74272606|gb|DQ122868.1| 51695 g95424 i0 86.598 19.0731707317073 194 26 79 0 51 244 34 227 Chlamydomonas incerta 40S ribosomal protein S3 mRNA, complete cds blastn 4692 215 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
16757629 16757629 PRJNA1067370_P_NODE_21534_length_407_cov_1.395210_g20986_i0 PRJNA1067370 21534 407 1.39521 5.6785047 Monoraphidium neglectum 145388 Plants Plants 309 2.1e-79   NTclustered gi|926773763|ref|XM_014039902.1| 145388 g20986 i0 80.723 61.1965601965602 415 64 100 14 1 407 411 5 Monoraphidium neglectum 60S ribosomal protein L19-2 mRNA blastn 24907 309 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
20139629 20139629 PRJNA1067370_P_NODE_15616_length_468_cov_2.858228_g15068_i0 PRJNA1067370 15616 468 2.858228 13.37650704 Eukaryota 2759 Plants Plants 331 5.220000000000001e-86   NTclustered gi|926781221|ref|XM_014043631.1| 145388 g15068 i0 82.292 67.3867521367521 384 66 82 2 7 389 383 1 Monoraphidium neglectum large subunit ribosomal protein L40e mRNA blastn 31537 333 0.993993993993994 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
20582153 20582153 PRJNA1067370_P_NODE_69897_length_265_cov_1.104167_g69348_i0 PRJNA1067370 69897 265 1.104167 2.92604255 Chlamydomonas reinhardtii 3055 Plants Plants 54.7 0.007   NTclustered gi|2082257431|ref|XM_043067004.1| 3055 g69348 i0 100 0.109433962264151 29 0 11 0 16 44 3514 3486 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g453500v5), mRNA blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22690123 22690123 PRJNA1067370_P_NODE_74778_length_257_cov_2.347826_g74229_i0 PRJNA1067370 74778 257 2.347826 6.03391282 Desmochloris 138596 Plants Plants 460 3.28e-125   NTclustered gi|313476263|emb|FM882216.1| 138176 g74229 i0 99.216 99.2217898832685 255 2 99 0 1 255 599 853 Desmochloris halophila partial 18S rRNA gene, ITS1, 5.8S rRNA and ITS2, strain CCAP 6006/1 blastn 25500 460 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
24406713 24406713 PRJNA1067370_P_NODE_30500_length_353_cov_1.517857_g29952_i0 PRJNA1067370 30500 353 1.517857 5.35803521 Monoraphidium neglectum 145388 Plants Plants 267 1.09e-66   NTclustered gi|926795717|ref|XM_014050538.1| 145388 g29952 i0 84.058 72.2152974504249 276 44 78 0 65 340 61 336 Monoraphidium neglectum 40S ribosomal protein S20-1 mRNA blastn 25492 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;