RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA1067370 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4007266 4007266 PRJNA1067370_P_NODE_33924_length_339_cov_2.586466_g33376_i0 PRJNA1067370 33924 339 2.586466 8.76811974 Raphidocystis contractilis 2792838 Root_unresolved Root_unresolved 211 4.99e-50   NTclustered gi|259475521|emb|FN392329.1| 2792838 g33376 i0 80.505 4.21533923303835 277 52 81 2 46 321 63 338 Raphidiophrys contractilis partial mRNA for ADP/ATP translocase 1, contig 0629MP25 blastn 1429 211 1 Eukaryota Haptista     Centroplasthelida Acanthocystida Raphidocystidae Raphidocystis Raphidocystis contractilis
4007492 4007492 PRJNA1067370_P_NODE_66144_length_270_cov_2.238579_g65595_i0 PRJNA1067370 66144 270 2.238579 6.0441633 Dicrateria rotunda 2703868 Haptophyta other_Eukaryota 156 1.83e-33   NTclustered gi|259419557|emb|FN392572.1| 2703868 g65595 i0 87.5 19.3222222222222 136 15 50 2 84 218 318 452 Imantonia rotunda partial mRNA for 40S ribosomal protein S4, contig 03105 blastn 5217 156 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Dicrateria Dicrateria rotunda
14209333 14209333 PRJNA1067370_P_NODE_117532_length_227_cov_2.850649_g116983_i0 PRJNA1067370 117532 227 2.850649 6.47097323 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 97.1 9.21e-16   NTclustered gi|551620821|ref|XM_005790870.1| 280463 g116983 i0 86.022 36.5462555066079 93 10 40 3 8 98 192 101 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 8296 97.1 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
14209703 14209703 PRJNA1067370_P_NODE_64792_length_272_cov_2.316583_g64243_i0 PRJNA1067370 64792 272 2.316583 6.3011057599999996 Pterocystis sp. Pt3672_28_5 238776 Root_unresolved Root_unresolved 187 6.559999999999998e-43   NTclustered gi|33089909|gb|AY283745.1| 238776 g64243 i0 79.623 83.1433823529412 265 50 97 4 3 265 308 570 Pterocystis sp. Pt3672_28_5 actin mRNA, partial cds blastn 22615 187 1 Eukaryota Haptista     Centroplasthelida Pterocystida Pterocystidae Pterocystis Pterocystis sp. Pt3672_28_5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;