RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 7 ✖

bioproject 1

  • PRJNA1067370 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2731782 2731782 PRJNA1067370_S_NODE_5663_length_250_cov_1.209040_g5637_i0 PRJNA1067370 5663 250 1.20904 3.0226 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 Bacteria Bacteria 457 4.1099999999999985e-124   NTclustered gi|837350690|gb|CP011211.1| 1619070 g5637 i0 99.6 121.688 250 1 100 0 1 250 852511 852262 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 30422 457 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
2731783 2731783 PRJNA1067370_S_NODE_5743_length_249_cov_1.312500_g5717_i0 PRJNA1067370 5743 249 1.3125 3.268125 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 Bacteria Bacteria 455 1.47e-123   NTclustered gi|837350690|gb|CP011211.1| 1619070 g5717 i0 100 96.5341365461847 246 0 99 0 4 249 852103 851858 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 24037 455 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
7833176 7833176 PRJNA1067370_P_NODE_110387_length_242_cov_0.911243_g109838_i0 PRJNA1067370 110387 242 0.911243 2.20520806 Patescibacteria group bacterium 2052139 Bacteria Bacteria 52.8 0.022   NTclustered gi|2621785934|emb|OY782392.1| 2052139 g109838 i0 100 0.115702479338843 28 0 12 0 24 51 1004112 1004085 MAG: Patescibacteria group bacterium isolate 573f42cd-6ce4-4b95-a45b-0ed028197a55 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
7833802 7833802 PRJNA1067370_S_NODE_4307_length_277_cov_2.205882_g4281_i0 PRJNA1067370 4307 277 2.205882 6.11029314 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 Bacteria Bacteria 512 9.73e-141   NTclustered gi|837350690|gb|CP011211.1| 1619070 g4281 i0 100 101.032490974729 277 0 100 0 1 277 850094 849818 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 27986 512 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
10384574 10384574 PRJNA1067370_S_NODE_649_length_519_cov_2.244395_g623_i0 PRJNA1067370 649 519 2.244395 11.64841005 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 Bacteria Bacteria 959 0   NTclustered gi|837350690|gb|CP011211.1| 1619070 g623 i0 100 235.391136801541 519 0 100 0 1 519 851005 850487 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 122168 959 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
20582407 20582407 PRJNA1067370_S_NODE_5877_length_247_cov_2.212644_g5851_i0 PRJNA1067370 5877 247 2.212644 5.46523068 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 Bacteria Bacteria 457 4.05e-124   NTclustered gi|837350690|gb|CP011211.1| 1619070 g5851 i0 100 107.668016194332 247 0 100 0 1 247 852518 852764 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 26594 457 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
24406474 24406474 PRJNA1067370_P_NODE_107660_length_243_cov_0.905882_g107111_i0 PRJNA1067370 107660 243 0.905882 2.20129326 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 388 1.47e-103   NTclustered gi|1474570736|gb|CP023991.1| 2026720 g107111 i0 95.473 264.843621399177 243 11 100 0 1 243 884368 884126 Candidatus Saccharibacteria bacterium isolate CG19_WC_8_21_14_NA_150_51_44 chromosome, complete genome blastn 64357 388 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;