RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1066877" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA1066877 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7832880 7832880 PRJNA1066877_S_NODE_10627_length_172_cov_1.081301_g10592_i0 PRJNA1066877 10627 172 1.081301 1.85983772 Fusobacterium polymorphum 76857 Bacteria Bacteria 318 1.2899999999999999e-82   NTclustered gi|2706407748|gb|CP077116.1| 76857 g10592 i0 100 100.877906976744 172 0 100 0 1 172 820074 820245 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 17351 318 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
8666100 8666100 PRJNA1066877_S_NODE_12487_length_163_cov_0.894737_g12452_i0 PRJNA1066877 12487 163 0.894737 1.45842131 Leptotrichia 32067 Bacteria Bacteria 185 1.28e-42   NTclustered gi|2028887161|gb|CP072377.1| 712361 g12452 i0 94.215 54.2147239263804 121 7 85 0 1 121 1819999 1820119 Leptotrichia sp. oral taxon 218 strain F0707 chromosome, complete genome blastn 8837 185 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 218
12934122 12934122 PRJNA1066877_S_NODE_3611_length_258_cov_1.100478_g3576_i0 PRJNA1066877 3611 258 1.100478 2.83923324 Fusobacterium polymorphum 76857 Bacteria Bacteria 477 3.2699999999999985e-130   NTclustered gi|2706506546|gb|CP084156.1| 76857 g3576 i0 100 99.7480620155039 258 0 100 0 1 258 1506939 1506682 Fusobacterium polymorphum strain KCOM2510 chromosome blastn 25735 477 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
13766468 13766468 PRJNA1066877_S_NODE_9751_length_178_cov_1.472868_g9716_i0 PRJNA1066877 9751 178 1.472868 2.62170504 Fusobacterium 848 Bacteria Bacteria 329 6.21e-86   NTclustered gi|2706407748|gb|CP077116.1| 76857 g9716 i0 100 100 178 0 100 0 1 178 114022 114199 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 17800 329 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
15040804 15040804 PRJNA1066877_S_NODE_8912_length_185_cov_1.066176_g8877_i0 PRJNA1066877 8912 185 1.066176 1.9724256 Fusobacterium 848 Bacteria Bacteria 337 3.89e-88   NTclustered gi|2705007409|gb|CP084122.1| 851 g8877 i0 99.459 100 185 1 100 0 1 185 402837 402653 Fusobacterium nucleatum strain KCOM3412 chromosome, complete genome blastn 18500 337 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
18864472 18864472 PRJNA1066877_S_NODE_11955_length_165_cov_0.879310_g11920_i0 PRJNA1066877 11955 165 0.87931 1.4508615 Fusobacterium 848 Bacteria Bacteria 300 4.46e-77   NTclustered gi|2446175567|gb|CP117964.1| 851 g11920 i0 99.394 97.8909090909091 165 1 100 0 1 165 1286643 1286807 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 16152 300 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
25239198 25239198 PRJNA1066877_S_NODE_11580_length_166_cov_1.128205_g11545_i0 PRJNA1066877 11580 166 1.128205 1.8728203 Fusobacterium 848 Bacteria Bacteria 307 2.69e-79   NTclustered gi|2706407748|gb|CP077116.1| 76857 g11545 i0 100 99.4578313253012 166 0 100 0 1 166 778775 778940 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 16510 307 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;