RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1066877" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1066877 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9108056 9108056 PRJNA1066877_S_NODE_7528_length_196_cov_11.904762_g7493_i0 PRJNA1066877 7528 196 11.904762 23.33333352 Philasterides dicentrarchi 282688 SAR_Eukaryotes SAR_Eukaryotes 228 2.619999999999999e-55   NTclustered gi|49616744|gb|AY643504.1| 282688 g7493 i0 87.692 82.280612244898 195 24 99 0 1 195 300 106 Philasterides dicentrarchi 26S ribosomal RNA gene, partial sequence blastn 16127 228 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Philasteridae Philasterides Philasterides dicentrarchi
15483157 15483157 PRJNA1066877_S_NODE_4753_length_233_cov_1.108696_g4718_i0 PRJNA1066877 4753 233 1.108696 2.58326168 Placidida sp. 2810146 SAR_Eukaryotes SAR_Eukaryotes 148 2.5899999999999997e-31   NTclustered gi|2048770197|gb|MT042897.1| 2810146 g4718 i0 81.183 8.00429184549356 186 33 79 2 5 189 77 261 Placidida sp. strain HFCC739 ribosomal protein S15A mRNA, complete cds blastn 1865 148 1 Eukaryota Sar     Bigyra Placidida     Placidida sp.
16757342 16757342 PRJNA1066877_S_NODE_6614_length_206_cov_0.815287_g6579_i0 PRJNA1066877 6614 206 0.815287 1.67949122 Lembadion sp. FG-2015 1607877 SAR_Eukaryotes SAR_Eukaryotes 370 4.38e-98   NTclustered gi|759083556|gb|KM222173.1| 1607877 g6579 i0 99.029 99.7087378640777 206 2 100 0 1 206 320 115 Lembadion sp. FG-2015 voucher FYB2013031305 large subunit ribosomal RNA gene, partial sequence blastn 20540 370 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Lembadionidae Lembadion Lembadion sp. FG-2015
16757378 16757378 PRJNA1066877_S_NODE_8794_length_186_cov_0.912409_g8759_i0 PRJNA1066877 8794 186 0.912409 1.69708074 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 178 2.5099999999999993e-40   NTclustered gi|820695469|tpe|LN714488.1| 572307 g8759 i0 94.068 3.74731182795699 118 6 100 1 1 117 157490 157373 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 697 178 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;