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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA1065838" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1065838 · 24 ✖

analysis 1

  • blastn · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
179963 179963 PRJNA1065838_S_NODE_10341_length_244_cov_1.287179_g10239_i0 PRJNA1065838 10341 244 1.287179 3.14071676 Canis lupus 9612 Chordata Chordata 396 8.829999999999997e-106   NTclustered gi|116175039|gb|AC189730.3| 9615 g10239 i0 95.902 33.9098360655738 244 10 100 0 1 244 10244 10001 Canis Familiaris, clone XX-494D7, complete sequence blastn 8274 396 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
179975 179975 PRJNA1065838_S_NODE_12341_length_229_cov_38.922222_g12239_i0 PRJNA1065838 12341 229 38.922222 89.13188838 Hyla sarda 327740 Chordata Chordata 54.7 0.006   NTclustered gi|2512208616|ref|XM_056523793.1| 327740 g12239 i0 88.889 1.87336244541485 45 3 19 2 187 229 11979 12023 PREDICTED: Hyla sarda glutamate ionotropic receptor NMDA type subunit 2B (GRIN2B), transcript variant X4, mRNA blastn 429 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
179990 179990 PRJNA1065838_S_NODE_1581_length_503_cov_6.590308_g1479_i0 PRJNA1065838 1581 503 6.590308 33.14924924 Anolis forresti 1748263 Chordata Chordata 75 1.05e-8   NTclustered gi|1127897598|emb|LN899495.1| 1748263 g1479 i0 97.674 86.5825049701789 43 1 9 0 3 45 164 122 Anolis forresti DNA containing partial HoxA11 gene, HoxA11-HoxA10 IGS and partial HoxA10 gene blastn 43551 75 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis forresti
4006529 4006529 PRJNA1065838_S_NODE_30804_length_171_cov_0.877049_g30702_i0 PRJNA1065838 30804 171 0.877049 1.49975379 Canis lupus 9612 Chordata Chordata 281 1.68e-71   NTclustered gi|125658990|gb|EF377406.1| 9615 g30702 i0 98.137 27.6374269005848 161 3 94 0 11 171 1 161 Canis familiaris clone CSac12 satellite sequence blastn 4726 281 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
6116003 6116003 PRJNA1065838_S_NODE_9445_length_253_cov_0.906863_g9343_i0 PRJNA1065838 9445 253 0.906863 2.29436339 Canis 9611 Chordata Chordata 327 3.41e-85   NTclustered gi|35187712|gb|AY339973.1| 9615 g9343 i0 90.119 8.93280632411067 253 23 100 1 1 253 1145 895 Canis familiaris clone 1 satellite sequence blastn 2260 329 0.993920972644377 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
6557899 6557899 PRJNA1065838_S_NODE_13586_length_223_cov_3.465517_g13484_i0 PRJNA1065838 13586 223 3.465517 7.72810291 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.006   NTclustered gi|840016890|emb|LK066393.1| 202946 g13484 i0 100 0.130044843049327 29 0 13 0 126 154 207549 207577 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold1803 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
7390188 7390188 PRJNA1065838_S_NODE_24466_length_190_cov_0.943262_g24364_i0 PRJNA1065838 24466 190 0.943262 1.7921978 Canidae 9608 Chordata Chordata 318 1.46e-82   NTclustered gi|55162801|emb|AJ630364.1| 9615 g24364 i0 96.842 684.18947368421 190 6 100 0 1 190 49112 48923 Canis familiaris major histocompatibility complex class II region on chromosome CFA12, partial sequence, BAC clone 58o15, containing DLA-DRB1 and RPS27 pseudogenes, DLA-DOB, TAP2, PSMB8, TAP1 and PSMB9 genes, and RPS15A and ATP6V0D2 pseudogenes blastn 129996 318 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
10383254 10383254 PRJNA1065838_S_NODE_1709_length_487_cov_2264.317352_g1607_i0 PRJNA1065838 1709 487 2264.317352 11027.22550424 Anolis evermanni 235305 Chordata Chordata 117 1.66e-21   NTclustered gi|1127897526|emb|LN899475.1| 235305 g1607 i0 95.833 127.963039014374 72 3 15 0 9 80 10683 10754 Anolis evermanni DNA containing partial HoxA13 gene, HoxA13-HoxA11 IGS blastn 62318 117 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis evermanni
10383283 10383283 PRJNA1065838_S_NODE_2289_length_439_cov_5.158974_g2187_i0 PRJNA1065838 2289 439 5.158974 22.64789586 Polypterus senegalus 55291 Chordata Chordata 333 1.35e-86   NTclustered gi|1993892376|ref|XM_039743353.1| 55291 g2187 i0 80.889 13.5125284738041 450 63 98 21 1 432 939 495 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120522331), mRNA blastn 5932 333 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
10383300 10383300 PRJNA1065838_S_NODE_25069_length_188_cov_1.035971_g24967_i0 PRJNA1065838 25069 188 1.035971 1.94762548 Meleagris gallopavo 9103 Chordata Chordata 318 1.44e-82   NTclustered gi|2721461484|emb|HG999715.4| 9103 g24967 i0 97.34 909.271276595745 188 4 100 1 1 188 8664 8478 Meleagris gallopavo genome assembly, chromosome: 18 blastn 170943 318 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
10383422 10383422 PRJNA1065838_S_NODE_36469_length_162_cov_0.805310_g36367_i0 PRJNA1065838 36469 162 0.80531 1.3046022 Canis lupus 9612 Chordata Chordata 250 4.45e-62   NTclustered gi|35187712|gb|AY339973.1| 9615 g36367 i0 95 11.3086419753086 160 7 98 1 1 159 196 37 Canis familiaris clone 1 satellite sequence blastn 1832 250 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
11658731 11658731 PRJNA1065838_S_NODE_35710_length_163_cov_0.903509_g35608_i0 PRJNA1065838 35710 163 0.903509 1.47271967 Canis lupus 9612 Chordata Chordata 263 5.77e-66   NTclustered gi|125490459|gb|AC188152.13| 9615 g35608 i0 96.815 275.325153374233 157 5 100 0 1 157 50037 49881 Canis Familiaris chromosome 3, clone XX-500D6, complete sequence blastn 44878 263 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
11658752 11658752 PRJNA1065838_S_NODE_610_length_686_cov_1562.940345_g525_i0 PRJNA1065838 610 686 1562.940345 10721.7707667 Anolis evermanni 235305 Chordata Chordata 117 2.39e-21   NTclustered gi|1127897526|emb|LN899475.1| 235305 g525 i0 95.833 99.0626822157434 72 3 10 0 607 678 10754 10683 Anolis evermanni DNA containing partial HoxA13 gene, HoxA13-HoxA11 IGS blastn 67957 117 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis evermanni
14208703 14208703 PRJNA1065838_S_NODE_19632_length_203_cov_1.564935_g19530_i0 PRJNA1065838 19632 203 1.564935 3.17681805 Canis lupus 9612 Chordata Chordata 342 9.369999999999999e-90   NTclustered gi|2272651613|ref|XR_007408774.1| 286419 g19530 i0 97.044 567.428571428571 203 6 100 0 1 203 1284 1486 PREDICTED: Canis lupus dingo uncharacterized LOC112668198 (LOC112668198), transcript variant X3, ncRNA blastn 115188 342 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
15482772 15482772 PRJNA1065838_S_NODE_1773_length_481_cov_1.550926_g1671_i0 PRJNA1065838 1773 481 1.550926 7.45995406 Canis lupus 9612 Chordata Chordata 756 0   NTclustered gi|125658996|gb|EF377412.1| 9615 g1671 i0 95.01 43.1496881496882 481 24 100 0 1 481 579 99 Canis familiaris clone CSac24 satellite sequence blastn 20755 756 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
15482928 15482928 PRJNA1065838_S_NODE_5513_length_313_cov_474.367424_g5411_i0 PRJNA1065838 5513 313 474.367424 1484.77003712 Meleagris gallopavo 9103 Chordata Chordata 414 3.24e-111   NTclustered gi|2721461478|emb|HG999708.4| 9103 g5411 i0 99.559 224.166134185304 227 1 73 0 87 313 4827412 4827638 Meleagris gallopavo genome assembly, chromosome: 24 blastn 70164 414 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
18031699 18031699 PRJNA1065838_S_NODE_19875_length_202_cov_41.235294_g19773_i0 PRJNA1065838 19875 202 41.235294 83.29529388 Hyla sarda 327740 Chordata Chordata 54.7 0.005   NTclustered gi|2512160518|ref|XM_056558461.1| 327740 g19773 i0 100 2.72772277227723 29 0 14 0 1 29 3950 3978 PREDICTED: Hyla sarda MAX network transcriptional repressor (MNT), transcript variant X2, mRNA blastn 551 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
18031794 18031794 PRJNA1065838_S_NODE_29675_length_174_cov_0.784000_g29573_i0 PRJNA1065838 29675 174 0.784 1.36416 Mirounga angustirostris 9716 Chordata Chordata 217 4.91e-52   NTclustered gi|2721859287|ref|XM_064570780.1| 9716 g29573 i0 90.533 175.189655172414 169 8 93 5 2 163 1052 885 PREDICTED: Mirounga angustirostris ribonuclease A family member 13 (inactive) (RNASE13), transcript variant X5, mRNA blastn 30483 217 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Mirounga Mirounga angustirostris
18031800 18031800 PRJNA1065838_S_NODE_30055_length_173_cov_0.830645_g29953_i0 PRJNA1065838 30055 173 0.830645 1.43701585 Canis lupus 9612 Chordata Chordata 292 7.87e-75   NTclustered gi|190576522|gb|AC186968.15| 9615 g29953 i0 97.661 40.1734104046243 171 3 100 1 4 173 110544 110374 Canis familiaris chromosome 3, clone XX-219I19, complete sequence blastn 6950 292 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
18031859 18031859 PRJNA1065838_S_NODE_3635_length_371_cov_6.850932_g3533_i0 PRJNA1065838 3635 371 6.850932 25.41695772 Polypterus senegalus 55291 Chordata Chordata 359 1.86e-94   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g3533 i0 90 14.2641509433962 280 25 75 3 68 345 1173 1451 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 5292 359 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
21856858 21856858 PRJNA1065838_S_NODE_25398_length_187_cov_0.789855_g25296_i0 PRJNA1065838 25398 187 0.789855 1.47702885 Canis lupus 9612 Chordata Chordata 246 6.84e-61   NTclustered gi|1766855516|gb|MK492646.1| 9612 g25296 i0 91.62 2.87700534759358 179 14 95 1 1 178 238 416 Canis lupus clone EF00053909 satellite satellite-like sequence blastn 538 246 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
23132316 23132316 PRJNA1065838_S_NODE_22839_length_194_cov_0.813793_g22737_i0 PRJNA1065838 22839 194 0.813793 1.57875842 Anolis forresti 1748263 Chordata Chordata 56.5 0.001   NTclustered gi|1127895902|emb|LN899532.1| 1748263 g22737 i0 100 4.14432989690722 30 0 15 0 1 30 10613 10584 Anolis forresti DNA containing partial HoxD11 gene, HoxD11-HoxD10 IGS and partial HoxD10 gene blastn 804 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis forresti
23132425 23132425 PRJNA1065838_S_NODE_34879_length_164_cov_0.904348_g34777_i0 PRJNA1065838 34879 164 0.904348 1.48313072 Meleagris gallopavo 9103 Chordata Chordata 303 3.42e-78   NTclustered gi|2721460881|emb|HG999687.4| 9103 g34777 i0 100 1 164 0 100 0 1 164 3209146 3208983 Meleagris gallopavo genome assembly, chromosome: 7 blastn 164 303 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
25238746 25238746 PRJNA1065838_S_NODE_24140_length_191_cov_1.070423_g24038_i0 PRJNA1065838 24140 191 1.070423 2.04450793 Canis 9611 Chordata Chordata 353 4.02e-93   NTclustered gi|110332046|gb|AC186975.3| 9615 g24038 i0 100 320.251308900524 191 0 100 0 1 191 53416 53606 Canis Familiaris chromosome 2, clone XX-252E5, complete sequence blastn 61168 353 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;