RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1065838" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1065838 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12933698 12933698 PRJNA1065838_S_NODE_1651_length_494_cov_3.964045_g1549_i0 PRJNA1065838 1651 494 3.964045 19.5823823 Trebouxia sp. SL0000003 3350044 Plants Plants 58.4 0.001   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g1549 i0 100 0.125506072874494 31 0 6 0 39 69 2994134 2994164 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 62 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
15040104 15040104 PRJNA1065838_S_NODE_22072_length_196_cov_1.047619_g21970_i0 PRJNA1065838 22072 196 1.047619 2.05333324 Eukaryota 2759 Plants Plants 86.1 1.67e-12   NTclustered gi|371782092|emb|HE610124.1| 55999 g21970 i0 100 25.9897959183673 46 0 23 0 151 196 2157 2112 Stigeoclonium helveticum 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 477-2 blastn 5094 86.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Stigeoclonium Stigeoclonium helveticum
16315262 16315262 PRJNA1065838_S_NODE_9653_length_251_cov_1.247525_g9551_i0 PRJNA1065838 9653 251 1.247525 3.13128775 root 1 Root_unresolved Root_unresolved 459 1.1499999999999996e-124   NTclustered gi|1714003650|gb|MN243923.1| 3079 g9551 i0 99.602 100.059760956175 251 1 100 0 1 251 609 859 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 25115 459 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;