RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1065838" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1065838 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2730632 2730632 PRJNA1065838_S_NODE_32843_length_167_cov_1.144068_g32741_i0 PRJNA1065838 32843 167 1.144068 1.91059356 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 52.8 0.014   NTclustered gi|2107924860|gb|CP070807.1| 2035772 g32741 i0 100 0.167664670658683 28 0 17 0 96 123 1703431 1703404 MAG: Candidatus Omnitrophota bacterium isolate bin1292 chromosome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
19305672 19305672 PRJNA1065838_S_NODE_21736_length_197_cov_1.054054_g21634_i0 PRJNA1065838 21736 197 1.054054 2.07648638 Thermoguttaceae bacterium 2691551 Bacteria Bacteria 99 2.16e-16   NTclustered gi|2814788363|emb|OY780964.2| 2691551 g21634 i0 90.541 1.15736040609137 74 7 38 0 124 197 889659 889586 MAG: Thermoguttaceae bacterium isolate 5d2646e0-01ad-46f9-a460-09296c79865c genome assembly, chromosome: 1 blastn 228 99 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Thermoguttaceae   Thermoguttaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;