RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1065838" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA1065838 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13765772 13765772 PRJNA1065838_S_NODE_21711_length_197_cov_1.081081_g21609_i0 PRJNA1065838 21711 197 1.081081 2.12972957 Kinetoplastea 5653 Euglenozoa other_Eukaryota 326 9.1e-85   NTclustered gi|77994645|gb|DQ207583.1| 312471 g21609 i0 98.907 127.979695431472 183 1 92 1 5 186 183 1 Neobodo designis strain HFCC306 18S ribosomal RNA gene, partial sequence blastn 25212 329 0.990881458966565 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
23132326 23132326 PRJNA1065838_S_NODE_24139_length_191_cov_1.077465_g24037_i0 PRJNA1065838 24139 191 1.077465 2.05795815 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 265 1.94e-66   NTclustered gi|290997645|ref|XM_002681346.1| 5762 g24037 i0 91.623 1 191 16 100 0 1 191 402 212 Naegleria gruberi 40s ribosomal protein S3a (NAEGRDRAFT_57012), mRNA blastn 191 265 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;