RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1065838" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1065838 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14208713 14208713 PRJNA1065838_S_NODE_20952_length_199_cov_1.253333_g20850_i0 PRJNA1065838 20952 199 1.253333 2.49413267 Dictyostelium discoideum 44689 Evosea other_Eukaryota 56.5 0.001   NTclustered gi|66811303|ref|XM_634268.1| 352472 g20850 i0 100 2.26130653266332 30 0 15 0 166 195 3598 3569 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0282851) mRNA, complete cds blastn 450 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14208829 14208829 PRJNA1065838_S_NODE_35972_length_162_cov_1.831858_g35870_i0 PRJNA1065838 35972 162 1.831858 2.96760996 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 289 9.44e-74   NTclustered gi|470515114|ref|XM_004352828.1| 1257118 g35870 i0 98.765 1 162 2 100 0 1 162 392 231 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_069360), partial mRNA blastn 162 289 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15482829 15482829 PRJNA1065838_S_NODE_25953_length_185_cov_1.147059_g25851_i0 PRJNA1065838 25953 185 1.147059 2.12205915 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 298 1.84e-76   NTclustered gi|470422909|ref|XM_004337493.1| 1257118 g25851 i0 95.676 1 185 8 100 0 1 185 234 50 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_163660), partial mRNA blastn 185 298 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19305692 19305692 PRJNA1065838_S_NODE_23376_length_193_cov_1.000000_g23274_i0 PRJNA1065838 23376 193 1 1.93 Paramoeba branchiphila 308475 Discosea other_Eukaryota 161 2.6499999999999996e-35   NTclustered gi|226347442|gb|FJ807261.1| 308475 g23274 i0 84.024 48.3937823834197 169 26 88 1 5 173 443 610 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 9340 161 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;