RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1063685" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1063685 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5282488 5282488 PRJNA1063685_S_NODE_50605_length_316_cov_5.399177_g50062_i0 PRJNA1063685 50605 316 5.399177 17.06139932 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 429 1.17e-115   NTclustered gi|2874253768|emb|OY969715.1| 412056 g50062 i0 91.961 112.376582278481 311 17 97 7 1 307 914546 914852 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 35511 429 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
5282633 5282633 PRJNA1063685_S_NODE_68125_length_255_cov_1.692308_g67582_i0 PRJNA1063685 68125 255 1.692308 4.3153854 Opitutaceae bacterium TAV5 794903 Bacteria Bacteria 54.7 0.006   NTclustered gi|573471959|gb|CP007053.1| 794903 g67582 i0 96.97 0.129411764705882 33 0 13 1 100 132 603864 603833 Opitutaceae bacterium TAV5, complete genome blastn 33 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium TAV5
7832401 7832401 PRJNA1063685_S_NODE_61547_length_275_cov_1.039604_g61004_i0 PRJNA1063685 61547 275 1.039604 2.858911 Opitutaceae bacterium TAV5 794903 Bacteria Bacteria 76.8 1.5e-9   NTclustered gi|573471959|gb|CP007053.1| 794903 g61004 i0 89.831 0.476363636363636 59 6 28 0 1 59 266569 266627 Opitutaceae bacterium TAV5, complete genome blastn 131 76.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium TAV5
20580527 20580527 PRJNA1063685_S_NODE_25317_length_463_cov_14.205128_g24777_i0 PRJNA1063685 25317 463 14.205128 65.76974264 Prosthecobacter fusiformis 48464 Bacteria Bacteria 676 0   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g24777 i0 94.545 235.796976241901 440 21 95 2 1 439 616 179 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 109174 676 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis
21856223 21856223 PRJNA1063685_S_NODE_1558_length_979_cov_11.597130_g1267_i0 PRJNA1063685 1558 979 11.59713 113.5359027 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 1070 0   NTclustered gi|2874254096|emb|OY970179.1| 412056 g1267 i0 87.033 125.020429009193 964 106 98 14 1 957 1728602 1727651 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 122395 1070 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;