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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA1063685" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA1063685 · 17 ✖

analysis 1

  • blastn · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2729998 2729998 PRJNA1063685_S_NODE_27963_length_444_cov_2.916442_g27422_i0 PRJNA1063685 27963 444 2.916442 12.94900248 Globisporangium hypogynum 255163 SAR_Eukaryotes SAR_Eukaryotes 191 8.73e-44   NTclustered gi|115111174|gb|DQ914548.1| 255163 g27422 i0 80.738 48.5833333333333 244 47 55 0 23 266 657 900 Pythium hypogynum strain BK clone 2 cytochrome c oxidase subunit I gene, partial cds; mitochondrial blastn 21571 191 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium hypogynum
4006354 4006354 PRJNA1063685_S_NODE_8644_length_651_cov_4.107266_g8139_i0 PRJNA1063685 8644 651 4.107266 26.73830166 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 307 1.25e-78   NTclustered gi|675204844|ref|XM_008913059.1| 761204 g8139 i0 78.2 17.1751152073733 500 95 76 13 159 651 664 172 Phytophthora parasitica INRA-310 ribosomal protein S4 mRNA blastn 11181 307 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
5282606 5282606 PRJNA1063685_S_NODE_64865_length_264_cov_4.246073_g64322_i0 PRJNA1063685 64865 264 4.246073 11.20963272 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 97.1 1.1e-15   NTclustered gi|669154215|ref|XM_008614448.1| 1156394 g64322 i0 87.059 1.20075757575758 85 11 32 0 150 234 248 332 Saprolegnia diclina VS20 cystathionine beta-synthase mRNA blastn 317 97.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
6115283 6115283 PRJNA1063685_S_NODE_64525_length_265_cov_3.947917_g63982_i0 PRJNA1063685 64525 265 3.947917 10.46198005 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.024   NTclustered gi|2795035382|ref|XM_067928504.1| 4785 g63982 i0 100 0.211320754716981 28 0 11 0 199 226 1529 1556 Phytophthora cinnamomi Lupus La protein (IUM83_04425), partial mRNA blastn 56 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
6557669 6557669 PRJNA1063685_S_NODE_54286_length_301_cov_1.491228_g53743_i0 PRJNA1063685 54286 301 1.491228 4.48859628 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 529 1.0599999999999996e-145   NTclustered gi|325194231|emb|FR825088.1| 890382 g53743 i0 98.339 15.4285714285714 301 5 100 0 1 301 1555 1255 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 4644 529 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7831950 7831950 PRJNA1063685_S_NODE_14287_length_570_cov_8.261569_g13761_i0 PRJNA1063685 14287 570 8.261569 47.0909433 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 320 1.3999999999999995e-82   NTclustered gi|2795059380|ref|XM_067933301.1| 4785 g13761 i0 79.046 79.2298245614035 482 90 84 10 93 570 1206 732 Phytophthora cinnamomi 26S protease regulatory subunit 8 (IUM83_08903), partial mRNA blastn 45161 320 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
7832029 7832029 PRJNA1063685_S_NODE_19487_length_514_cov_12.147392_g18949_i0 PRJNA1063685 19487 514 12.147392 62.43759488 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.9e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g18949 i0 80.533 65.8132295719844 375 65 72 4 34 401 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
8664963 8664963 PRJNA1063685_S_NODE_17967_length_530_cov_1.956236_g17431_i0 PRJNA1063685 17967 530 1.956236 10.3680508 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 291 1.01e-73   NTclustered gi|93139288|gb|DQ361189.1| 162113 g17431 i0 80.99 71.4037735849057 384 58 70 12 53 425 467 846 Peronospora conglomerata strain MG 18-11 NADH dehydrogenase subunit 1 (ND1) gene, partial cds; mitochondrial blastn 37844 292 0.996575342465753 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora conglomerata
10382834 10382834 PRJNA1063685_S_NODE_32609_length_411_cov_1.366864_g32067_i0 PRJNA1063685 32609 411 1.366864 5.61781104 Hyaloperonospora arabidopsidis 272952 SAR_Eukaryotes SAR_Eukaryotes 111 6.42e-20   NTclustered gi|2248512796|ref|NC_063789.1| 272952 g32067 i0 77.957 55.7080291970803 186 35 45 5 228 411 1107 926 Hyaloperonospora arabidopsidis isolate Noks1 mitochondrion, complete genome blastn 22896 111 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora arabidopsidis
10382994 10382994 PRJNA1063685_S_NODE_52049_length_310_cov_3.388186_g51506_i0 PRJNA1063685 52049 310 3.388186 10.5033766 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 243 1.6000000000000004e-59   NTclustered gi|695406619|ref|XM_009525862.1| 67593 g51506 i0 89.175 61.6709677419355 194 21 63 0 11 204 1156 1349 Phytophthora sojae hypothetical protein partial mRNA blastn 19118 243 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
12490875 12490875 PRJNA1063685_S_NODE_40650_length_365_cov_1.921233_g40107_i0 PRJNA1063685 40650 365 1.921233 7.01250045 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 211 5.4e-50   NTclustered gi|2795027162|ref|XM_067926592.1| 4785 g40107 i0 81.569 3.2958904109589 255 47 70 0 3 257 687 433 Phytophthora cinnamomi pre-mRNA-splicing factor CWC22 (IUM83_02652), partial mRNA blastn 1203 211 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
18031305 18031305 PRJNA1063685_S_NODE_40995_length_363_cov_3.548276_g40452_i0 PRJNA1063685 40995 363 3.548276 12.88024188 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 255 2.45e-63   NTclustered gi|2794882649|ref|XM_067895061.1| 164328 g40452 i0 84.151 34.3856749311295 265 40 73 2 98 361 546 283 Phytophthora ramorum ADP-ribosylation factor (KRP23_969), partial mRNA blastn 12482 255 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
19305207 19305207 PRJNA1063685_S_NODE_27156_length_450_cov_2.387268_g26615_i0 PRJNA1063685 27156 450 2.387268 10.742706 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 108 9.17e-19   NTclustered gi|698793878|ref|XR_717100.1| 112090 g26615 i0 81.679 32.1088888888889 131 23 35 1 247 376 3791 3661 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 14449 108 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
20580440 20580440 PRJNA1063685_S_NODE_17797_length_531_cov_12.602620_g17261_i0 PRJNA1063685 17797 531 12.60262 66.9199122 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 407 9.66e-109   NTclustered gi|2794905961|ref|XM_067889945.1| 164328 g17261 i0 81.386 42.7570621468927 505 89 95 5 6 508 674 1175 Phytophthora ramorum 26S proteasome regulatory subunit 6B-like protein (KRP23_4930), partial mRNA blastn 22704 407 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
20580721 20580721 PRJNA1063685_S_NODE_43457_length_350_cov_3.884477_g42914_i0 PRJNA1063685 43457 350 3.884477 13.5956695 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 558 1.5999999999999994e-154   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g42914 i0 97.554 98.4771428571429 327 6 93 2 1 325 2235 2561 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 34467 558 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
20580740 20580740 PRJNA1063685_S_NODE_45077_length_342_cov_2.698885_g44534_i0 PRJNA1063685 45077 342 2.698885 9.2301867 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 198 3.9199999999999996e-46   NTclustered gi|2794923344|ref|XM_067881972.1| 164328 g44534 i0 77.846 3.57894736842105 325 68 94 4 4 326 1547 1225 Phytophthora ramorum T-complex protein 1 subunit epsilon (KRP23_11422), partial mRNA blastn 1224 198 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
22688778 22688778 PRJNA1063685_S_NODE_38_length_3583_cov_20.662393_g9_i0 PRJNA1063685 38 3583 20.662393 740.33354119 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 370 9.07e-97   NTclustered gi|2248512996|ref|NC_063794.1| 4785 g9 i0 72.72 23.788166341055 1195 293 33 28 1270 2448 14929 13752 Phytophthora cinnamomi culture NZFS:3750 mitochondrion, complete genome blastn 85233 370 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;