RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1063685" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1063685 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4006206 4006206 PRJNA1063685_S_NODE_57784_length_288_cov_2.148837_g57241_i0 PRJNA1063685 57784 288 2.148837 6.18865056 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 484 2.2199999999999994e-132   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g57241 i0 98.545 61.8159722222222 275 2 95 2 15 288 2852 3125 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17803 484 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
14208376 14208376 PRJNA1063685_S_NODE_47852_length_329_cov_1.503906_g47309_i0 PRJNA1063685 47852 329 1.503906 4.94785074 Tetramitus jugosus 166959 Heterolobosea other_Eukaryota 300 1e-76   NTclustered gi|2233316042|emb|OW569396.1| 166959 g47309 i0 84.259 78.2948328267477 324 34 95 14 19 329 21199 21518 Tetramitus jugosus genome assembly, organelle: mitochondrion blastn 25759 300 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus jugosus
16756708 16756708 PRJNA1063685_S_NODE_61294_length_275_cov_6.039604_g60751_i0 PRJNA1063685 61294 275 6.039604 16.608911 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 357 4.78e-94   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g60751 i0 90.977 40.6727272727273 266 23 96 1 11 275 1850 2115 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11185 357 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;