RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1063685" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1063685 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1454028 1454028 PRJNA1063685_S_NODE_13662_length_578_cov_5.924752_g13141_i0 PRJNA1063685 13662 578 5.924752 34.24506656 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 715 0   NTclustered gi|2874253978|emb|OY970303.1| 412054 g13141 i0 89.157 84.719723183391 581 53 99 8 1 576 3486147 3485572 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 48968 715 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5282537 5282537 PRJNA1063685_S_NODE_5605_length_715_cov_14.691589_g5147_i0 PRJNA1063685 5605 715 14.691589 105.04486135 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 870 0   NTclustered gi|2874253978|emb|OY970303.1| 412054 g5147 i0 88.828 248.383216783217 725 60 99 18 1 713 3486287 3485572 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 177594 870 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
11658076 11658076 PRJNA1063685_S_NODE_28370_length_441_cov_3.114130_g27829_i0 PRJNA1063685 28370 441 3.11413 13.7333133 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 499 1.27e-136   NTclustered gi|575456455|gb|CP007128.1| 861299 g27829 i0 88.443 42.3605442176871 424 35 94 12 1 416 3042722 3042305 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 18681 499 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
15482655 15482655 PRJNA1063685_S_NODE_74233_length_241_cov_2.857143_g73690_i0 PRJNA1063685 74233 241 2.857143 6.88571463 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 337 5.35e-88   NTclustered gi|2874253978|emb|OY970303.1| 412054 g73690 i0 92.05 151.278008298755 239 19 100 0 1 239 5292644 5292882 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 36458 337 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;