RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA1063685" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA1063685 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6557544 6557544 PRJNA1063685_S_NODE_38086_length_378_cov_7.963934_g37543_i0 PRJNA1063685 38086 378 7.963934 30.10367052 Entamoeba histolytica 5759 Evosea other_Eukaryota 390 6.72e-104   NTclustered gi|467633|emb|Z29969.1| 5759 g37543 i0 85.526 47.8068783068783 380 48 100 7 1 378 2026 1652 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 18071 390 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
9106948 9106948 PRJNA1063685_S_NODE_14228_length_571_cov_5.265060_g13703_i0 PRJNA1063685 14228 571 5.26506 30.0634926 Echinostelium arboreum 318077 Evosea other_Eukaryota 569 1.2599999999999999e-157   NTclustered gi|210062525|gb|AY842030.2| 318077 g13703 i0 95.775 51.7600700525394 355 11 62 2 207 560 954 603 Echinostelium arboreum strain ATCC 66095 18S ribosomal RNA gene, partial sequence blastn 29555 569 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium arboreum
9107232 9107232 PRJNA1063685_S_NODE_4048_length_766_cov_12.924964_g3636_i0 PRJNA1063685 4048 766 12.924964 99.00522424 Physarum polycephalum 5791 Evosea other_Eukaryota 556 1.34e-153   NTclustered gi|161213|gb|M98863.1|SLMALTA 5791 g3636 i0 82.308 76.3446475195822 650 107 84 8 47 692 690 1335 Physarum polycephalum alpha-tubulin (altA) mRNA, complete cds blastn 58480 556 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
14208610 14208610 PRJNA1063685_S_NODE_79992_length_208_cov_5.096296_g79449_i0 PRJNA1063685 79992 208 5.096296 10.60029568 Phalansterium solitarium 136499 Evosea other_Eukaryota 209 1.02e-49   NTclustered gi|33339666|gb|AF280078.1| 136499 g79449 i0 85.577 100.033653846154 208 21 100 6 1 208 1506 1704 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence blastn 20807 209 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium
15482594 15482594 PRJNA1063685_S_NODE_65213_length_263_cov_4.147368_g64670_i0 PRJNA1063685 65213 263 4.147368 10.90757784 Entamoeba histolytica 5759 Evosea other_Eukaryota 113 1.09e-20   NTclustered gi|415339|emb|X65163.1| 5759 g64670 i0 78.723 2.03422053231939 188 26 70 7 18 200 5975 6153 E.histolytica rRNA blastn 535 113 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
16756414 16756414 PRJNA1063685_S_NODE_28094_length_443_cov_3.013514_g27553_i0 PRJNA1063685 28094 443 3.013514 13.34986702 Entamoeba histolytica 5759 Evosea other_Eukaryota 315 4.95e-81   NTclustered gi|415339|emb|X65163.1| 5759 g27553 i0 80.493 13.7042889390519 446 58 98 22 12 443 5392 5822 E.histolytica rRNA blastn 6071 315 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
16756603 16756603 PRJNA1063685_S_NODE_4774_length_740_cov_4.035982_g4348_i0 PRJNA1063685 4774 740 4.035982 29.8662668 Dictyostelium purpureum 5786 Evosea other_Eukaryota 510 1.02e-139   NTclustered gi|330791897|ref|XM_003283980.1| 5786 g4348 i0 80.851 46.9716216216216 658 119 89 5 22 677 846 1498 Dictyostelium purpureum 26S proteasome ATPase 2 subunit (DICPUDRAFT_96551), mRNA blastn 34759 510 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
19305145 19305145 PRJNA1063685_S_NODE_22296_length_488_cov_6.927711_g21756_i0 PRJNA1063685 22296 488 6.927711 33.80722968 Entamoeba histolytica 5759 Evosea other_Eukaryota 147 2.12e-30   NTclustered gi|1865795|emb|Y11271.1| 5759 g21756 i0 90.909 8.67418032786885 110 8 36 2 356 464 1093 985 E.histolytica ss1 gene blastn 4233 147 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
19305561 19305561 PRJNA1063685_S_NODE_78776_length_221_cov_7.141892_g78233_i0 PRJNA1063685 78776 221 7.141892 15.78358132 Acytostelium subglobosum 361139 Evosea other_Eukaryota 62.1 3.25e-5   NTclustered gi|831755157|ref|XM_012892876.1| 1410327 g78233 i0 91.304 0.208144796380091 46 2 20 2 59 103 8 52 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 46 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;