RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1063685" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1063685 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11658362 11658362 PRJNA1063685_S_NODE_63150_length_270_cov_1.167513_g62607_i0 PRJNA1063685 63150 270 1.167513 3.1522851 Monoblepharis insignis 109953 Fungi Fungi 464 2.6799999999999994e-126   NTclustered gi|19386988|gb|AF450112.1| 109953 g62607 i0 97.778 99.7444444444444 270 5 100 1 1 270 86 354 Monoblepharis insignis translation elongation factor 1-alpha gene, partial cds blastn 26931 464 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Monoblepharidaceae Monoblepharis Monoblepharis insignis
16756448 16756448 PRJNA1063685_S_NODE_31614_length_417_cov_6.287791_g31072_i0 PRJNA1063685 31614 417 6.287791 26.22008847 Fimicolochytrium jonesii 1396493 Fungi Fungi 71.3 1.11e-7   NTclustered gi|2432057423|ref|XM_053069416.1| 1396493 g31072 i0 92.157 0.122302158273381 51 3 12 1 345 394 2104 2054 Fimicolochytrium jonesii hsp71-like protein (EV422DRAFT_516945), mRNA blastn 51 71.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
16756733 16756733 PRJNA1063685_S_NODE_65414_length_263_cov_1.473684_g64871_i0 PRJNA1063685 65414 263 1.473684 3.87578892 Fimicolochytrium jonesii 1396493 Fungi Fungi 110 1.4e-19   NTclustered gi|2432067715|ref|XM_053066883.1| 1396493 g64871 i0 85.047 0.634980988593156 107 16 41 0 119 225 164 58 Fimicolochytrium jonesii translation machinery associated TMA7 (EV422DRAFT_394557), mRNA blastn 167 110 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;