RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1063685" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1063685 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8665398 8665398 PRJNA1063685_S_NODE_807_length_1193_cov_20.861607_g608_i0 PRJNA1063685 807 1193 20.861607 248.87897151 Phototrophicus 2922426 Bacteria Bacteria 1005 0   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g608 i0 82.579 579.394803017603 1171 174 97 25 25 1182 2827430 2828583 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 691218 1005 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
9107406 9107406 PRJNA1063685_S_NODE_64228_length_266_cov_2.906736_g63685_i0 PRJNA1063685 64228 266 2.906736 7.73191776 uncultured Chloroflexota bacterium 166587 Bacteria Bacteria 82.4 3.1e-11   NTclustered gi|577860303|dbj|AB826881.1| 166587 g63685 i0 91.803 24.9248120300752 61 2 23 3 204 263 217 159 Uncultured Chloroflexi bacterium gene for 16S rRNA, partial sequence, clone: OGT_AB15_32.5cm_86 blastn 6630 82.4 1 Bacteria   Bacillati Chloroflexota         uncultured Chloroflexota bacterium
17589800 17589800 PRJNA1063685_S_NODE_43994_length_347_cov_5.383212_g43451_i0 PRJNA1063685 43994 347 5.383212 18.67974564 Chloroflexus 1107 Bacteria Bacteria 274 6.439999999999998e-69   NTclustered gi|470483916|ref|NR_076619.1| 152260 g43451 i0 82.748 229.64265129683 313 49 90 5 15 325 975 666 Chloroflexus aggregans strain MD-66 23S ribosomal RNA gene, complete sequence blastn 79686 274 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aggregans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;