RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1063685" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1063685 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2729879 2729879 PRJNA1063685_S_NODE_16683_length_543_cov_4.061702_g16152_i0 PRJNA1063685 16683 543 4.061702 22.05504186 Parachlamydiales bacterium 2052178 Bacteria Bacteria 691 0   NTclustered gi|2874253890|emb|OY970065.1| 2052178 g16152 i0 91.176 429.081031307551 510 44 94 1 18 526 626500 625991 MAG: Parachlamydiales bacterium isolate MFD09286.bin.c.6 genome assembly, chromosome: 1 blastn 232991 691 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
2729880 2729880 PRJNA1063685_S_NODE_16823_length_541_cov_22.692308_g16291_i0 PRJNA1063685 16823 541 22.692308 122.76538628 Parachlamydiales bacterium 2052178 Bacteria Bacteria 817 0   NTclustered gi|2874253890|emb|OY970065.1| 2052178 g16291 i0 95.499 91.1275415896488 511 23 94 0 24 534 624145 624655 MAG: Parachlamydiales bacterium isolate MFD09286.bin.c.6 genome assembly, chromosome: 1 blastn 49300 817 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
6557550 6557550 PRJNA1063685_S_NODE_38626_length_375_cov_11.519868_g38083_i0 PRJNA1063685 38626 375 11.519868 43.199505 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 292 1.9299999999999993e-74   NTclustered gi|1869331976|gb|CP058704.1| 2052176 g38083 i0 82.022 352.554666666667 356 52 94 10 2 352 1333977 1334325 Parachlamydiaceae bacterium isolate SSA5 chromosome blastn 132208 292 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
6557648 6557648 PRJNA1063685_S_NODE_50806_length_315_cov_6.826446_g50263_i0 PRJNA1063685 50806 315 6.826446 21.5033049 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 353 7.22e-93   NTclustered gi|2874253811|emb|OY969795.1| 464461 g50263 i0 88.927 169.136507936508 289 28 91 4 5 290 655116 655403 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 53278 353 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
14208553 14208553 PRJNA1063685_S_NODE_70832_length_248_cov_2.800000_g70289_i0 PRJNA1063685 70832 248 2.8 6.944 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 165 2.76e-36   NTclustered gi|1869331976|gb|CP058704.1| 2052176 g70289 i0 88.489 15.9717741935484 139 12 55 4 89 225 1332798 1332934 Parachlamydiaceae bacterium isolate SSA5 chromosome blastn 3961 165 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
23131910 23131910 PRJNA1063685_S_NODE_40759_length_364_cov_4.941581_g40216_i0 PRJNA1063685 40759 364 4.941581 17.98735484 Parachlamydiales bacterium 2052178 Bacteria Bacteria 486 7.989999999999999e-133   NTclustered gi|2874253890|emb|OY970065.1| 2052178 g40216 i0 93.134 108.535714285714 335 18 92 2 22 356 627025 627354 MAG: Parachlamydiales bacterium isolate MFD09286.bin.c.6 genome assembly, chromosome: 1 blastn 39507 486 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;