RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1063685" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1063685 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2287227 2287227 PRJNA1063685_S_NODE_39622_length_370_cov_4.814815_g39079_i0 PRJNA1063685 39622 370 4.814815 17.8148155 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 608 1.6599999999999992e-169   NTclustered gi|2325195844|gb|OM494341.1| 186043 g39079 i0 98.276 187.167567567568 348 5 94 1 1 347 90038 89691 Entomoneis sp. isolate C2 plastid, complete genome blastn 69252 614 0.990228013029316 Eukaryota Sar   Bacillariophyta Bacillariophyceae   Entomoneidaceae Entomoneis Entomoneis sp.
5282481 5282481 PRJNA1063685_S_NODE_49665_length_320_cov_8.246964_g49122_i0 PRJNA1063685 49665 320 8.246964 26.3902848 Navicula veneta 138539 SAR_Eukaryotes SAR_Eukaryotes 534 2.44e-147   NTclustered gi|2088232805|ref|NC_056793.1| 138539 g49122 i0 99.322 77.16875 295 2 92 0 1 295 21193 20899 Navicula veneta isolate SZCZR1826 mitochondrion, complete genome blastn 24694 534 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula veneta
5282685 5282685 PRJNA1063685_S_NODE_75945_length_235_cov_3.240741_g75402_i0 PRJNA1063685 75945 235 3.240741 7.61574135 Pinnularia borealis complex sp. 2725370 SAR_Eukaryotes SAR_Eukaryotes 65.8 2.71e-6   NTclustered gi|1829659002|gb|MN940942.1| 2725370 g75402 i0 97.368 0.646808510638298 38 1 16 0 14 51 317 280 Pinnularia borealis complex sp. voucher MA15_11_04 28S ribosomal RNA gene, partial sequence blastn 152 65.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Pinnulariaceae Pinnularia Pinnularia borealis complex sp.
7832307 7832307 PRJNA1063685_S_NODE_4827_length_738_cov_3.090226_g4400_i0 PRJNA1063685 4827 738 3.090226 22.80586788 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 425 3.78e-114   NTclustered gi|657012465|gb|KF302574.1| 2850 g4400 i0 88.953 14.730352303523 344 38 47 0 142 485 346 3 Phaeodactylum tricornutum clone C567 ribosomal protein mRNA, partial cds blastn 10871 425 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
9107185 9107185 PRJNA1063685_S_NODE_34468_length_399_cov_9.717791_g33926_i0 PRJNA1063685 34468 399 9.717791 38.77398609 Navicula sp. 1923966 SAR_Eukaryotes SAR_Eukaryotes 579 1.4199999999999995e-160   NTclustered gi|2620230842|gb|OR797293.1| 1923966 g33926 i0 97.904 78.1027568922306 334 7 84 0 66 399 4109 4442 Navicula sp. strain SZCZEY2262 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31163 579 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula sp.
10382674 10382674 PRJNA1063685_S_NODE_16769_length_542_cov_6.091684_g16237_i0 PRJNA1063685 16769 542 6.091684 33.01692728 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 337 1.3099999999999995e-87   NTclustered gi|657012562|gb|KF302618.1| 2850 g16237 i0 86.901 3.35424354243542 313 26 56 10 24 325 331 23 Phaeodactylum tricornutum clone C537 hypothetical protein mRNA, complete cds blastn 1818 337 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
20138342 20138342 PRJNA1063685_S_NODE_36936_length_385_cov_1.974359_g36393_i0 PRJNA1063685 36936 385 1.974359 7.60128215 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 100 1.29e-16   NTclustered gi|2862228911|gb|PQ645545.1| 426632 g36393 i0 87.5 0.664935064935065 88 9 23 2 282 369 2368 2283 Chaetoceros diadema isolate AGSB0427 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 256 100 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros diadema
23131802 23131802 PRJNA1063685_S_NODE_29219_length_434_cov_11.897507_g28677_i0 PRJNA1063685 29219 434 11.897507 51.63518038 Guinardia striata 1514137 SAR_Eukaryotes SAR_Eukaryotes 263 1.78e-65   NTclustered gi|2074156236|gb|MW413904.1| 1514137 g28677 i0 79.733 36.2350230414747 375 67 85 9 44 413 2196 1826 Guinardia striata mitochondrion, complete genome blastn 15726 263 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia striata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;