RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1063685" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1063685 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3562404 3562404 PRJNA1063685_S_NODE_11223_length_611_cov_4.819703_g10708_i0 PRJNA1063685 11223 611 4.819703 29.44838533 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.017   NTclustered gi|1145259872|ref|XM_012907831.2| 5854 g10708 i0 94.286 0.199672667757774 35 2 6 0 462 496 388 354 Plasmodium reichenowi hypothetical protein partial mRNA blastn 122 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
9939954 9939954 PRJNA1063685_S_NODE_16448_length_545_cov_17.500000_g15917_i0 PRJNA1063685 16448 545 17.5 95.375 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 165 6.6e-36   NTclustered gi|396582138|gb|JN696678.1| 5874 g15917 i0 89.844 24.7761467889908 128 13 23 0 335 462 1262 1135 Theileria annulata 28S ribosomal RNA gene, partial sequence blastn 13503 165 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria annulata
15039686 15039686 PRJNA1063685_S_NODE_48072_length_327_cov_13.299213_g47529_i0 PRJNA1063685 48072 327 13.299213 43.48842651 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.84e-4   NTclustered gi|296005004|ref|XM_002808797.1| 36329 g47529 i0 94.872 5.98165137614679 39 1 12 1 288 325 537 575 Plasmodium falciparum 3D7 conserved protein, unknown function (PF3D7_0813300), partial mRNA blastn 1956 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;