RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1061474" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1061474 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2729481 2729481 PRJNA1061474_P_NODE_52803_length_245_cov_0.895349_g52557_i0 PRJNA1061474 52803 245 0.895349 2.19360505 Geobacter pickeringii 345632 Bacteria Bacteria 134 7.68e-27   NTclustered gi|747129828|gb|CP009788.1| 345632 g52557 i0 77.215 5.08163265306122 237 48 95 5 8 240 3002269 3002503 Geobacter pickeringii strain G13, complete genome blastn 1245 134 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter pickeringii
10382125 10382125 PRJNA1061474_P_NODE_47869_length_249_cov_0.875000_g47623_i0 PRJNA1061474 47869 249 0.875 2.17875 Nitratidesulfovibrio liaohensis 2604158 Bacteria Bacteria 167 7.709999999999999e-37   NTclustered gi|2575677524|gb|CP133659.1| 2604158 g47623 i0 79.508 34.7349397590361 244 42 96 8 10 249 3874602 3874841 Nitratidesulfovibrio liaohensis strain KPS chromosome, complete genome blastn 8649 167 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio liaohensis
19304688 19304688 PRJNA1061474_P_NODE_53196_length_245_cov_0.895349_g52950_i0 PRJNA1061474 53196 245 0.895349 2.19360505 Geoalkalibacter subterraneus 483547 Bacteria Bacteria 217 7.41e-52   NTclustered gi|749207097|gb|CP010311.1| 483547 g52950 i0 83.843 8.0734693877551 229 35 93 2 1 228 3367608 3367835 Geoalkalibacter subterraneus strain Red1, complete genome blastn 1978 217 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter subterraneus
23131109 23131109 PRJNA1061474_P_NODE_45839_length_251_cov_0.865169_g45593_i0 PRJNA1061474 45839 251 0.865169 2.17157419 Pelobacter propionicus 29543 Bacteria Bacteria 274 4.46e-69   NTclustered gi|118501159|gb|CP000482.1| 338966 g45593 i0 86.64 5.62151394422311 247 33 98 0 1 247 1843862 1843616 Pelobacter propionicus DSM 2379, complete genome blastn 1411 274 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Pelobacter Pelobacter propionicus
23131132 23131132 PRJNA1061474_P_NODE_46739_length_250_cov_0.870056_g46493_i0 PRJNA1061474 46739 250 0.870056 2.17514 Desulfomonile tiedjei 2358 Bacteria Bacteria 122 1.7e-23   NTclustered gi|390621545|gb|CP003360.1| 706587 g46493 i0 85.366 0.492 123 12 48 4 87 207 4554895 4554777 Desulfomonile tiedjei DSM 6799, complete genome blastn 123 122 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfomonilia Desulfomonilales Desulfomonilaceae Desulfomonile Desulfomonile tiedjei
24404815 24404815 PRJNA1061474_P_NODE_47860_length_249_cov_0.875000_g47614_i0 PRJNA1061474 47860 249 0.875 2.17875 uncultured Syntrophobacter sp. 281272 Bacteria Bacteria 211 3.51e-50   NTclustered gi|2621703986|emb|OY762941.1| 281272 g47614 i0 82.072 12 251 41 100 4 1 249 98636 98388 MAG: uncultured Syntrophobacter sp. isolate 8beb1b32-fcc7-4ae2-b8e9-2f20d438afad genome assembly, chromosome: 1 blastn 2988 211 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter uncultured Syntrophobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;