RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1061474" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1061474 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5281852 5281852 PRJNA1061474_P_NODE_57985_length_241_cov_0.916667_g57739_i0 PRJNA1061474 57985 241 0.916667 2.20916747 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 62.1 3.6e-5   NTclustered gi|2107964920|gb|CP070788.1| 2026770 g57739 i0 91.111 0.597510373443983 45 4 19 0 164 208 1991052 1991096 MAG: Nitrospiraceae bacterium isolate bin1476 chromosome blastn 144 62.1 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
11657640 11657640 PRJNA1061474_P_NODE_57930_length_241_cov_0.916667_g57684_i0 PRJNA1061474 57930 241 0.916667 2.20916747 Candidatus Manganitrophaceae bacterium 2932367 Bacteria Bacteria 52.8 0.022   NTclustered gi|2874254047|emb|OY970371.1| 2932367 g57684 i0 100 0.116182572614108 28 0 12 0 131 158 910341 910368 MAG: Candidatus Manganitrophaceae bacterium isolate MFD03066.bin.c.2 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae   Candidatus Manganitrophaceae bacterium
15481600 15481600 PRJNA1061474_P_NODE_45433_length_251_cov_0.865169_g45187_i0 PRJNA1061474 45433 251 0.865169 2.17157419 Candidatus Nitrospira allomarina 3020900 Bacteria Bacteria 163 1.01e-35   NTclustered gi|2582126190|gb|CP116967.1| 3020900 g45187 i0 79.399 2.81274900398406 233 46 92 2 1 232 2955912 2956143 Candidatus Nitrospira allomarina strain VA chromosome, complete genome blastn 706 163 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira allomarina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;