RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1061474" and tax_clade = "delta/epsilon subdivisions"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA1061474 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
179078 179078 PRJNA1061474_P_NODE_55581_length_243_cov_0.905882_g55335_i0 PRJNA1061474 55581 243 0.905882 2.20129326 uncultured delta proteobacterium 34034 Bacteria Bacteria 228 3.389999999999999e-55   NTclustered gi|2874253999|emb|OY970324.1| 34034 g55335 i0 83.607 1.14814814814815 244 38 100 2 1 243 1576490 1576732 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 279 228 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
12932518 12932518 PRJNA1061474_P_NODE_46691_length_250_cov_0.870056_g46445_i0 PRJNA1061474 46691 250 0.870056 2.17514 uncultured delta proteobacterium 34034 Bacteria Bacteria 198 2.75e-46   NTclustered gi|2874253999|emb|OY970324.1| 34034 g46445 i0 83.256 15.68 215 36 86 0 6 220 2789366 2789152 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 3920 198 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
14207550 14207550 PRJNA1061474_P_NODE_47872_length_249_cov_0.875000_g47626_i0 PRJNA1061474 47872 249 0.875 2.17875 uncultured delta proteobacterium 34034 Bacteria Bacteria 180 9.91e-41   NTclustered gi|2874253999|emb|OY970324.1| 34034 g47626 i0 80.335 4.57429718875502 239 45 96 2 1 238 2280744 2280981 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 1139 180 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;