RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1061474" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1061474 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2729549 2729549 PRJNA1061474_P_NODE_55663_length_243_cov_0.905882_g55417_i0 PRJNA1061474 55663 243 0.905882 2.20129326 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 261 3.34e-65   NTclustered gi|2874253892|emb|OY970067.1| 991135 g55417 i0 86.008 1.73251028806584 243 34 100 0 1 243 5267998 5267756 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 421 261 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium
4005376 4005376 PRJNA1061474_P_NODE_50364_length_247_cov_0.885057_g50118_i0 PRJNA1061474 50364 247 0.885057 2.18609079 Candidatus Eiseniibacteriota bacterium 2212470 Bacteria Bacteria 167 7.64e-37   NTclustered gi|2874254095|emb|OY970178.1| 2212470 g50118 i0 79.741 0.939271255060729 232 45 94 2 2 232 3277588 3277358 MAG: Candidatus Eisenbacteria bacterium isolate MFD05942.bin.c.1 genome assembly, chromosome: 1 blastn 232 167 1 Bacteria Bacteria candidate phyla   Candidatus Eiseniibacteriota         Candidatus Eiseniibacteriota bacterium
23131277 23131277 PRJNA1061474_P_NODE_52459_length_245_cov_0.895349_g52213_i0 PRJNA1061474 52459 245 0.895349 2.19360505 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 226 1.23e-54   NTclustered gi|2874253892|emb|OY970067.1| 991135 g52213 i0 83.401 33.1959183673469 247 37 100 2 1 245 4804343 4804099 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 8133 226 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;