RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1059246" and tax_phylum = "Tardigrada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tardigrada · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1059246 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1451491 1451491 PRJNA1059246_P_NODE_2382_length_1593_cov_4.378947_g2151_i0 PRJNA1059246 2382 1593 4.378947 69.75662571 Paramacrobiotus metropolitanus 2943436 Tardigrada other_Eukaryota 226 9.119999999999999e-54   NTclustered gi|2493447229|ref|XM_055483396.1| 2943436 g2151 i0 77.949 15.0326428123038 390 66 24 18 692 1071 1712 2091 PREDICTED: Paramacrobiotus metropolitanus apoptosis-stimulating of p53 protein 2-like (LOC129588961), mRNA blastn 23947 226 1 Eukaryota Opisthokonta Metazoa Tardigrada Eutardigrada Parachela Macrobiotidae Paramacrobiotus Paramacrobiotus metropolitanus
2727689 2727689 PRJNA1059246_P_NODE_48103_length_297_cov_1.812500_g47477_i0 PRJNA1059246 48103 297 1.8125 5.383125 Paramacrobiotus metropolitanus 2943436 Tardigrada other_Eukaryota 52.8 0.028   NTclustered gi|2493455069|ref|XM_055485454.1| 2943436 g47477 i0 100 0.188552188552189 28 0 9 0 63 90 1320 1347 PREDICTED: Paramacrobiotus metropolitanus uncharacterized LOC129590300 (LOC129590300), mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Tardigrada Eutardigrada Parachela Macrobiotidae Paramacrobiotus Paramacrobiotus metropolitanus
2727965 2727965 PRJNA1059246_P_NODE_70743_length_243_cov_0.864706_g70117_i0 PRJNA1059246 70743 243 0.864706 2.10123558 Paramacrobiotus metropolitanus 2943436 Tardigrada other_Eukaryota 254 5.59e-63   NTclustered gi|2493508314|ref|XM_055499276.1| 2943436 g70117 i0 86.325 89.3827160493827 234 30 96 2 1 233 1126 894 PREDICTED: Paramacrobiotus metropolitanus actin, clone 403-like (LOC129600713), mRNA blastn 21720 254 1 Eukaryota Opisthokonta Metazoa Tardigrada Eutardigrada Parachela Macrobiotidae Paramacrobiotus Paramacrobiotus metropolitanus
18028882 18028882 PRJNA1059246_P_NODE_44855_length_313_cov_0.954167_g44229_i0 PRJNA1059246 44855 313 0.954167 2.98654271 Paramacrobiotus metropolitanus 2943436 Tardigrada other_Eukaryota 215 3.53e-51   NTclustered gi|2493463315|ref|XM_055487665.1| 2943436 g44229 i0 79.43 4.91373801916933 316 56 100 8 1 313 1296 987 PREDICTED: Paramacrobiotus metropolitanus pre-mRNA-processing-splicing factor 8 (LOC129591837), mRNA blastn 1538 215 1 Eukaryota Opisthokonta Metazoa Tardigrada Eutardigrada Parachela Macrobiotidae Paramacrobiotus Paramacrobiotus metropolitanus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;