RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1059246" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1059246 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15479948 15479948 PRJNA1059246_P_NODE_44113_length_316_cov_1.267490_g43487_i0 PRJNA1059246 44113 316 1.26749 4.0052684 Sycon ciliatum 27933 Porifera other_Eukaryota 63.9 1.37e-5   NTclustered gi|2732930758|ref|XR_010553885.1| 27933 g43487 i0 93.182 1.82911392405063 44 1 14 2 147 190 1607 1648 PREDICTED: Sycon ciliatum NBAS subunit of NRZ tethering complex-like (LOC135819270), transcript variant X2, misc_RNA blastn 578 63.9 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
19302725 19302725 PRJNA1059246_P_NODE_34076_length_371_cov_1.026846_g33450_i0 PRJNA1059246 34076 371 1.026846 3.80959866 Corticium candelabrum 121492 Porifera other_Eukaryota 52.8 0.035   NTclustered gi|2664289465|ref|XM_062646689.1| 121492 g33450 i0 96.774 0.16711590296496 31 1 8 0 61 91 974 1004 PREDICTED: Corticium candelabrum dual specificity protein kinase splB-like (LOC134179741), transcript variant X1, mRNA blastn 62 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Plakinidae Corticium Corticium candelabrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;