RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1059246" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1059246 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6114520 6114520 PRJNA1059246_P_NODE_14245_length_623_cov_1.847273_g13651_i0 PRJNA1059246 14245 623 1.847273 11.50851079 Opisthokonta 33154 Platyhelminthes Platyhelminthes 56.5 0.005   NTclustered gi|690733191|emb|LN287289.1| 99802 g13651 i0 100 0.202247191011236 30 0 5 0 492 521 997 1026 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0075302 blastn 126 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
7389267 7389267 PRJNA1059246_P_NODE_57186_length_266_cov_1.994819_g56560_i0 PRJNA1059246 57186 266 1.994819 5.30621854 root 1 Root_unresolved Root_unresolved 54.7 0.007   NTclustered gi|690627005|emb|LN171382.1| 99802 g56560 i0 100 0.545112781954887 29 0 11 0 105 133 2062 2090 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0151809 blastn 145 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
14205868 14205868 PRJNA1059246_P_NODE_50392_length_288_cov_1.279070_g49766_i0 PRJNA1059246 50392 288 1.27907 3.6837216 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 62.1 4.43e-5   NTclustered gi|687154405|emb|LN001892.1| 99802 g49766 i0 97.222 31.7048611111111 36 1 13 0 40 75 7298 7263 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0001877 blastn 9131 62.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
15479583 15479583 PRJNA1059246_P_NODE_16333_length_575_cov_1.687251_g15723_i0 PRJNA1059246 16333 575 1.687251 9.70169325 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 54.7 0.016   NTclustered gi|687180295|emb|LN125789.1| 99802 g15723 i0 92.105 0.0660869565217391 38 3 7 0 170 207 593 556 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0116860 blastn 38 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
15479802 15479802 PRJNA1059246_P_NODE_32633_length_380_cov_1.729642_g32007_i0 PRJNA1059246 32633 380 1.729642 6.5726396 Echinococcus granulosus 6210 Platyhelminthes Platyhelminthes 78.7 5.98e-10   NTclustered gi|1373860836|ref|XM_024496795.1| 6210 g32007 i0 87.879 0.344736842105263 66 8 17 0 315 380 1401 1336 Echinococcus granulosus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member (EGR_07546), partial mRNA blastn 131 78.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
19302511 19302511 PRJNA1059246_P_NODE_17196_length_557_cov_4.212810_g16585_i0 PRJNA1059246 17196 557 4.21281 23.4653517 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 63.9 2.53e-5   NTclustered gi|687615833|emb|LK515075.1| 57078 g16585 i0 100 0.281867145421903 34 0 6 0 482 515 1142 1109 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0115118 blastn 157 63.9 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
20578043 20578043 PRJNA1059246_P_NODE_30997_length_392_cov_1.250784_g30371_i0 PRJNA1059246 30997 392 1.250784 4.90307328 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 52.8 0.037   NTclustered gi|2318762961|ref|XM_012936540.3| 6185 g30371 i0 100 0.0714285714285714 28 0 7 0 205 232 4958 4985 Schistosoma haematobium uncharacterized protein (MS3_00006654), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;