RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1059246" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1059246 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2727819 2727819 PRJNA1059246_P_NODE_59063_length_260_cov_0.973262_g58437_i0 PRJNA1059246 59063 260 0.973262 2.5304812 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 3.04e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g58437 i0 90.385 0.896153846153846 52 2 20 3 44 94 2561 2610 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 233 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
15479534 15479534 PRJNA1059246_P_NODE_12513_length_671_cov_2.096990_g11933_i0 PRJNA1059246 12513 671 2.09699 14.0708029 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 60.2 4e-4   NTclustered gi|2806485064|ref|XM_068512624.1| 1144522 g11933 i0 100 0.0476900149031297 32 0 5 0 163 194 1091 1060 Tritrichomonas foetus Myb-like DNA-binding domain containing protein (TRFO_39406), partial mRNA blastn 32 60.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
19302902 19302902 PRJNA1059246_P_NODE_47936_length_298_cov_1.368889_g47310_i0 PRJNA1059246 47936 298 1.368889 4.07928922 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 67.6 9.89e-7   NTclustered gi|123414015|ref|XM_001304398.1| 412133 g47310 i0 87.931 0.815436241610738 58 6 19 1 192 249 1323 1379 Trichomonas vaginalis G3 protein ubiquitination (TVAGG3_0883850), partial mRNA blastn 243 67.6 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;