RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1059246" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1059246 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1011417 1011417 PRJNA1059246_P_NODE_18921_length_527_cov_1.262115_g18303_i0 PRJNA1059246 18921 527 1.262115 6.65134605 Metamycoplasmataceae 2895623 Bacteria Bacteria 54.7 0.014   NTclustered gi|1563788636|emb|LR214955.1| 2115 g18303 i0 94.286 0.332068311195446 35 2 7 0 9 43 302911 302877 Mycoplasma fermentans strain NCTC10117 genome assembly, chromosome: 1 blastn 175 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans
17589392 17589392 PRJNA1059246_P_NODE_7274_length_909_cov_1.660287_g6786_i0 PRJNA1059246 7274 909 1.660287 15.09200883 Mycoplasmoides 2995234 Bacteria Bacteria 67.6 3.28e-6   NTclustered gi|1190813395|gb|CP017340.1| 2104 g6786 i0 100 3.98459845984598 36 0 4 0 583 618 809799 809764 Mycoplasmoides pneumoniae strain RI3 chromosome, complete genome blastn 3622 67.6 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides pneumoniae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;