RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1059246" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1059246 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4839522 4839522 PRJNA1059246_P_NODE_47064_length_302_cov_1.794760_g46438_i0 PRJNA1059246 47064 302 1.79476 5.4201752 Candidatus Protochlamydia 282132 Bacteria Bacteria 436 6.64e-118   NTclustered gi|1691252667|emb|BX908798.2| 264201 g46438 i0 92.715 164.327814569536 302 22 100 0 1 302 1250189 1249888 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 49627 436 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
7389112 7389112 PRJNA1059246_P_NODE_16426_length_573_cov_1.552000_g15816_i0 PRJNA1059246 16426 573 1.552 8.89296 Candidatus Protochlamydia 282132 Bacteria Bacteria 863 0   NTclustered gi|1691252667|emb|BX908798.2| 264201 g15816 i0 93.902 108.820244328098 574 31 100 4 1 573 1252830 1253400 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 62354 863 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
10380655 10380655 PRJNA1059246_P_NODE_63629_length_249_cov_1.312500_g63003_i0 PRJNA1059246 63629 249 1.3125 3.268125 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 394 3.25e-105   NTclustered gi|2874253811|emb|OY969795.1| 464461 g63003 i0 95.2 149.718875502008 250 11 100 1 1 249 654664 654913 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 37280 394 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;