RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1059246" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA1059246 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2727370 2727370 PRJNA1059246_P_NODE_22983_length_469_cov_11.007576_g22361_i0 PRJNA1059246 22983 469 11.007576 51.62553144 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 255 3.24e-63   NTclustered gi|551548842|ref|XM_005762007.1| 280463 g22361 i0 82.215 17.2153518123667 298 51 63 2 82 378 402 106 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 8074 255 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
2727727 2727727 PRJNA1059246_P_NODE_51363_length_285_cov_1.301887_g50737_i0 PRJNA1059246 51363 285 1.301887 3.71037795 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 126 1.5299999999999999e-24   NTclustered gi|551623680|ref|XM_005792082.1| 280463 g50737 i0 79.558 3.21754385964912 181 33 63 4 103 281 212 390 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 917 126 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
20577919 20577919 PRJNA1059246_P_NODE_21637_length_486_cov_16.600484_g21018_i0 PRJNA1059246 21637 486 16.600484 80.67835224 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 52.8 0.047   NTclustered gi|551571660|ref|XM_005771642.1| 280463 g21018 i0 100 0.0576131687242798 28 0 6 0 156 183 3017 3044 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
23129751 23129751 PRJNA1059246_P_NODE_69619_length_244_cov_0.900585_g68993_i0 PRJNA1059246 69619 244 0.900585 2.1974274 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 54.7 0.006   NTclustered gi|551587701|ref|XM_005778635.1| 280463 g68993 i0 94.286 0.286885245901639 35 2 14 0 141 175 535 501 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 70 54.7 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;