RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1057075" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1057075 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
176592 176592 PRJNA1057075_S_NODE_1901_length_288_cov_150.577406_g1802_i0 PRJNA1057075 1901 288 150.577406 433.66292928 Desmodesmus abundans 77547 Plants Plants 357 5.04e-94   NTclustered gi|2312613210|ref|NC_066651.1| 77547 g1802 i0 97.156 105.361111111111 211 6 75 0 1 211 74023 74233 Desmodesmus abundans strain FBCC-A1277 chloroplast, complete genome blastn 30344 357 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Desmodesmus Desmodesmus abundans
3562015 3562015 PRJNA1057075_S_NODE_683_length_387_cov_31797.115385_g585_i0 PRJNA1057075 683 387 31797.115385 123054.83653995 Eukaryota 2759 Plants Plants 621 2.2499999999999994e-173   NTclustered gi|1714003650|gb|MN243923.1| 3079 g585 i0 100 86.4651162790698 336 0 87 0 51 386 872 537 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 33462 621 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
6554549 6554549 PRJNA1057075_S_NODE_9846_length_158_cov_2.422018_g9747_i0 PRJNA1057075 9846 158 2.422018 3.82678844 Dicloster acuatus 91190 Plants Plants 102 1.28e-17   NTclustered gi|2724824305|gb|PP746556.1| 91190 g9747 i0 79.452 2.84810126582278 146 29 92 1 2 147 85839 85983 Dicloster acuatus culture SAG:41.98 mitochondrion, complete genome blastn 450 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
12490189 12490189 PRJNA1057075_S_NODE_1750_length_296_cov_8.712551_g1651_i0 PRJNA1057075 1750 296 8.712551 25.78915096 Scenedesmaceae 3086 Plants Plants 542 1.34e-149   NTclustered gi|955395807|gb|KR904903.1| 77547 g1651 i0 100 98.9966216216216 293 0 99 0 1 293 367 75 Desmodesmus abundans strain LRB-CO801 18S ribosomal RNA gene, partial sequence blastn 29303 542 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Desmodesmus Desmodesmus abundans
17589091 17589091 PRJNA1057075_S_NODE_274_length_489_cov_17851.543182_g210_i0 PRJNA1057075 274 489 17851.543182 87294.04615998 Scenedesmaceae 3086 Plants Plants 483 1.43e-131   NTclustered gi|2312613210|ref|NC_066651.1| 77547 g210 i0 91.944 99.6625766871166 360 5 76 6 77 436 76727 77062 Desmodesmus abundans strain FBCC-A1277 chloroplast, complete genome blastn 48735 484 0.997933884297521 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Desmodesmus Desmodesmus abundans
18028403 18028403 PRJNA1057075_S_NODE_4195_length_219_cov_2.111765_g4096_i0 PRJNA1057075 4195 219 2.111765 4.62476535 Monoraphidium neglectum 145388 Plants Plants 99 2.45e-16   NTclustered gi|926774775|ref|XM_014040408.1| 145388 g4096 i0 80.451 11 133 22 60 4 86 216 539 409 Monoraphidium neglectum 60S ribosomal protein L10 mRNA blastn 2409 99 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
24402599 24402599 PRJNA1057075_S_NODE_960_length_358_cov_13883.359223_g861_i0 PRJNA1057075 960 358 13883.359223 49702.42601834 Crucigenia quadrata 2782530 Plants Plants 473 6.11e-129   NTclustered gi|2875298507|gb|PQ301446.1| 2782530 g861 i0 93.73 133.435754189944 319 15 88 2 43 356 102919 102601 Crucigenia quadrata strain FACHB-1904 chloroplast, complete genome blastn 47770 473 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Crucigenia Crucigenia quadrata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;