RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1057075" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1057075 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11655150 11655150 PRJNA1057075_S_NODE_4050_length_222_cov_6.179191_g3951_i0 PRJNA1057075 4050 222 6.179191 13.71780402 Aeromicrobium sp. Leaf245 1736306 Bacteria Bacteria 355 1.34e-93   NTclustered gi|2241593934|emb|OW824151.1| 1736306 g3951 i0 98.99 246.900900900901 198 2 89 0 1 198 2452 2255 Aeromicrobium sp. Leaf245 isolate wt genome assembly, chromosome: 1 blastn 54812 355 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium sp. Leaf245
21853434 21853434 PRJNA1057075_S_NODE_10658_length_152_cov_3.902913_g10559_i0 PRJNA1057075 10658 152 3.902913 5.93242776 Corynebacterium hesseae 2913502 Bacteria Bacteria 279 5.24e-71   NTclustered gi|2704699628|gb|CP137211.1| 2913502 g10559 i0 100 359.644736842105 151 0 99 0 2 152 820498 820648 Corynebacterium hesseae strain 10VPs_Sm8 chromosome, complete genome blastn 54666 279 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium hesseae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;