RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1057075" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Sar · 12 ✖

bioproject 1

  • PRJNA1057075 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1451225 1451225 PRJNA1057075_S_NODE_10182_length_155_cov_5.764151_g10083_i0 PRJNA1057075 10182 155 5.764151 8.93443405 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 241 2.53e-59   NTclustered gi|859811083|gb|KM818001.1| 88167 g10083 i0 99.248 65 133 1 86 0 2 134 1289 1421 Poterioochromonas malhamensis strain SAG 933.1c 23S ribosomal RNA gene, partial sequence; plastid blastn 10075 241 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
4839337 4839337 PRJNA1057075_S_NODE_3664_length_231_cov_1968.186813_g3565_i0 PRJNA1057075 3664 231 1968.186813 4546.51153803 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 291 4.02e-74   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g3565 i0 95.58 40.1645021645022 181 8 78 0 46 226 370 190 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 9278 291 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
5279346 5279346 PRJNA1057075_S_NODE_4105_length_221_cov_1.744186_g4006_i0 PRJNA1057075 4105 221 1.744186 3.85465106 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 87.9 5.37e-13   NTclustered gi|53829589|gb|AY582847.1| 289359 g4006 i0 94.643 6.55656108597285 56 3 25 0 1 56 848 903 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 actin gene, partial cds blastn 1449 87.9 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
12930315 12930315 PRJNA1057075_S_NODE_2511_length_264_cov_10.600000_g2412_i0 PRJNA1057075 2511 264 10.6 27.984 Poteriospumella lacustris 1117027 SAR_Eukaryotes SAR_Eukaryotes 392 1.25e-104   NTclustered gi|2295553597|gb|OP378946.1| 1117027 g2412 i0 93.87 63.0643939393939 261 14 98 2 5 264 18 277 Poteriospumella lacustris isolate 1532 large subunit ribosomal RNA gene, partial sequence blastn 16649 392 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Poteriospumella Poteriospumella lacustris
14205274 14205274 PRJNA1057075_S_NODE_2212_length_275_cov_449.575221_g2113_i0 PRJNA1057075 2212 275 449.575221 1236.33185775 Leukarachnion sp. ATCC PRA-24 568390 SAR_Eukaryotes SAR_Eukaryotes 180 1.11e-40   NTclustered gi|2727570083|gb|PP760457.1| 568390 g2113 i0 84.699 29.8 183 25 65 2 1 180 2294 2476 Leukarachnion sp. ATCC PRA-24 culture ATCC:BJ-24B2 mitochondrion, complete genome blastn 8195 180 1 Eukaryota Sar             Leukarachnion sp. ATCC PRA-24
15479403 15479403 PRJNA1057075_S_NODE_2353_length_269_cov_52640.877273_g2254_i0 PRJNA1057075 2353 269 52640.877273 141603.95986437 Placidida sp. 2810146 SAR_Eukaryotes SAR_Eukaryotes 126 1.43e-24   NTclustered gi|2048770203|gb|MT042900.1| 2810146 g2254 i0 83.212 18.2230483271375 137 23 51 0 10 146 257 393 Placidida sp. strain HFCC1258 ribosomal protein S15A mRNA, complete cds blastn 4902 126 1 Eukaryota Sar     Bigyra Placidida     Placidida sp.
15479411 15479411 PRJNA1057075_S_NODE_3853_length_227_cov_1.398876_g3754_i0 PRJNA1057075 3853 227 1.398876 3.17544852 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 420 4.81e-113   NTclustered gi|859811083|gb|KM818001.1| 88167 g3754 i0 100 103.066079295154 227 0 100 0 1 227 954 728 Poterioochromonas malhamensis strain SAG 933.1c 23S ribosomal RNA gene, partial sequence; plastid blastn 23396 420 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
16753487 16753487 PRJNA1057075_S_NODE_1134_length_340_cov_9.426117_g1035_i0 PRJNA1057075 1134 340 9.426117 32.0487978 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 586 7.119999999999998e-163   NTclustered gi|512134943|gb|JX178902.1| 1295638 g1035 i0 99.08 93.7735294117647 326 3 96 0 15 340 1396 1071 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 31883 586 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
19302325 19302325 PRJNA1057075_S_NODE_8716_length_165_cov_4.362069_g8617_i0 PRJNA1057075 8716 165 4.362069 7.19741385 Pseudellipsoidion edaphicum 1431838 SAR_Eukaryotes SAR_Eukaryotes 292 7.47e-75   NTclustered gi|1567482280|ref|NC_040299.1| 1431838 g8617 i0 98.78 126.818181818182 164 2 99 0 1 164 39597 39760 Pseudellipsoidion edaphicum strain CAUP Q 401 plastid, complete genome blastn 20925 292 1 Eukaryota Sar     Eustigmatophyceae Eustigmatales Neomonodaceae Pseudellipsoidion Pseudellipsoidion edaphicum
21853462 21853462 PRJNA1057075_S_NODE_5178_length_200_cov_1.993377_g5079_i0 PRJNA1057075 5178 200 1.993377 3.986754 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 111 2.83e-20   NTclustered gi|219123891|ref|XM_002182214.1| 556484 g5079 i0 85.714 1.05 105 15 53 0 21 125 321 425 Phaeodactylum tricornutum CCAP 1055/1 ubiquitin extension protein 1/2 (UBI1/2), mRNA blastn 210 111 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23128900 23128900 PRJNA1057075_S_NODE_4199_length_219_cov_1.482353_g4100_i0 PRJNA1057075 4199 219 1.482353 3.24635307 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 95.3 3.17e-15   NTclustered gi|820693004|tpe|LN714485.1| 572307 g4100 i0 86.364 1.15525114155251 88 10 40 2 83 169 854581 854667 TPA_asm: Neospora caninum Liverpool, chromosome chrX, complete genome blastn 253 95.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
24402569 24402569 PRJNA1057075_S_NODE_2980_length_249_cov_490.885000_g2881_i0 PRJNA1057075 2980 249 490.885 1222.30365 Hydrurus foetidus 2996 SAR_Eukaryotes SAR_Eukaryotes 108 4.74e-19   NTclustered gi|219903754|emb|FM955257.1| 2996 g2881 i0 89.535 33.9839357429719 86 7 34 2 19 102 1765 1850 Hydrurus foetidus partial 28S rRNA gene blastn 8462 108 1 Eukaryota Sar     Chrysophyceae Hydrurales Hydruraceae Hydrurus Hydrurus foetidus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;