RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1057075" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1057075 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6554525 6554525 PRJNA1057075_S_NODE_3806_length_228_cov_3.849162_g3707_i0 PRJNA1057075 3806 228 3.849162 8.77608936 Aliterella chasmolithica 2739056 Bacteria Bacteria 326 1.08e-84   NTclustered gi|1713066352|gb|MN243145.1| 2599943 g3707 i0 94.737 109.504385964912 209 11 92 0 18 226 2178 1970 Aliterella chasmolithica PJ S15 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 24967 326 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Aliterellaceae Aliterella Aliterella chasmolithica
18028404 18028404 PRJNA1057075_S_NODE_4435_length_213_cov_6.445122_g4336_i0 PRJNA1057075 4435 213 6.445122 13.72810986 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 305 1.3e-78   NTclustered gi|225696178|gb|FJ805845.1| 259957 g4336 i0 93.301 126.868544600939 209 10 97 4 7 213 1770 1564 Uncultured Chroococcidiopsis sp. clone AU1_4 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 27023 305 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
21853466 21853466 PRJNA1057075_S_NODE_6298_length_185_cov_1.323529_g6199_i0 PRJNA1057075 6298 185 1.323529 2.44852865 Calothrix sp. 336/3 1337936 Bacteria Bacteria 300 5.110000000000001e-77   NTclustered gi|817925425|gb|CP011382.1| 1337936 g6199 i0 96.175 220.432432432432 183 7 99 0 3 185 2531315 2531133 Calothrix sp. 336/3, complete genome blastn 40780 300 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix sp. 336/3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;