RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1057075" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA1057075 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5279361 5279361 PRJNA1057075_S_NODE_6945_length_178_cov_3.124031_g6846_i0 PRJNA1057075 6945 178 3.124031 5.56077518 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 76.8 8.94e-10   NTclustered gi|470375882|ref|XM_004333185.1| 1257118 g6846 i0 92.453 7.17415730337079 53 4 30 0 1 53 179 231 Acanthamoeba castellanii str. Neff ubiquitin domain containing protein (ACA1_389410), partial mRNA blastn 1277 76.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6114453 6114453 PRJNA1057075_S_NODE_2925_length_251_cov_2.237624_g2826_i0 PRJNA1057075 2925 251 2.237624 5.61643624 Ripella 1217112 Discosea other_Eukaryota 385 1.97e-102   NTclustered gi|1269228355|gb|MF683480.1| 2047821 g2826 i0 97.768 89.593625498008 224 3 89 2 28 250 993 771 Ripella platypodia clone 23.4.29 18S ribosomal RNA gene, partial sequence blastn 22488 387 0.994832041343669 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
7829204 7829204 PRJNA1057075_S_NODE_6187_length_186_cov_2.204380_g6088_i0 PRJNA1057075 6187 186 2.20438 4.1001468 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 283 5.179999999999999e-72   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g6088 i0 94.624 15.4193548387097 186 5 98 4 1 183 379 196 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 2868 283 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
9104207 9104207 PRJNA1057075_S_NODE_2248_length_274_cov_2.377778_g2149_i0 PRJNA1057075 2248 274 2.377778 6.51511172 Ripella sp. PS2 1217116 Discosea other_Eukaryota 503 5.78e-138   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g2149 i0 100 99.992700729927 272 0 99 0 1 272 414 143 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 27398 503 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
12930322 12930322 PRJNA1057075_S_NODE_4211_length_218_cov_58.041420_g4112_i0 PRJNA1057075 4211 218 58.04142 126.5302956 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 211 3e-50   NTclustered gi|659103927|gb|KJ569727.1| 1512276 g4112 i0 86.364 25.6422018348624 198 21 90 3 1 196 1091 1284 Cochliopodium kieliense clone 9611 18S ribosomal RNA gene, partial sequence blastn 5590 211 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
18028402 18028402 PRJNA1057075_S_NODE_415_length_449_cov_30446.410000_g329_i0 PRJNA1057075 415 449 30446.41 136704.3809 Protostelium mycophagum 472931 Evosea other_Eukaryota 99 5.51e-16   NTclustered gi|262262904|gb|FJ766447.1| 472931 g329 i0 78.344 21.913140311804 157 30 35 4 295 449 1298 1144 Protostelium mycophagum strain HI06-7A-1 small subunit ribosomal RNA gene, partial sequence blastn 9839 99 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
19302303 19302303 PRJNA1057075_S_NODE_236_length_511_cov_23265.906926_g176_i0 PRJNA1057075 236 511 23265.906926 118888.78439186 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 448 5.4599999999999985e-121   NTclustered gi|659103927|gb|KJ569727.1| 1512276 g176 i0 84.764 40.7866927592955 466 49 90 21 4 461 592 1043 Cochliopodium kieliense clone 9611 18S ribosomal RNA gene, partial sequence blastn 20842 448 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
24402593 24402593 PRJNA1057075_S_NODE_7400_length_174_cov_4.288000_g7301_i0 PRJNA1057075 7400 174 4.288 7.46112 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 97.1 6.67e-16   NTclustered gi|221185881|gb|FJ577828.1| 590481 g7301 i0 91.429 23.3505747126437 70 6 40 0 1 70 1243 1312 Uncultured Amoebozoa clone Joinv04 18S ribosomal RNA gene, partial sequence blastn 4063 97.1 1 Eukaryota Amoebozoa             uncultured Amoebozoa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;