RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA1054617" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1054617 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3561923 3561923 PRJNA1054617_S_NODE_10283_length_181_cov_2.333333_g10195_i0 PRJNA1054617 10283 181 2.333333 4.22333273 Picea 3328 Plants Plants 335 1.36e-87   NTclustered gi|270137713|gb|BT104665.1| 3330 g10195 i0 100 3 181 0 100 0 1 181 526 346 Picea glauca clone GQ02813_D19 mRNA sequence blastn 543 335 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea glauca
7829085 7829085 PRJNA1054617_S_NODE_10867_length_177_cov_1.716418_g10779_i0 PRJNA1054617 10867 177 1.716418 3.03805986 Cistanche tubulosa 161397 Plants Plants 60.2 8.94e-5   NTclustered gi|1784901244|gb|MK279655.1| 161397 g10779 i0 100 30.1638418079096 32 0 18 0 146 177 39 8 Cistanche tubulosa WRKY family protein 2 mRNA, complete cds blastn 5339 60.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Orobanchaceae Cistanche Cistanche tubulosa
15038881 15038881 PRJNA1054617_S_NODE_11312_length_174_cov_1.755725_g11224_i0 PRJNA1054617 11312 174 1.755725 3.0549615 Eukaryota 2759 Plants Plants 52.8 0.015   NTclustered gi|2835530366|dbj|LC777195.1| 3329 g11224 i0 100 0.32183908045977 28 0 16 0 1 28 30 57 Picea abies Pa-Kumamoto-2022 PaMurB mRNA for UDP-N-acetylmuramate dehydrogenase, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
15038938 15038938 PRJNA1054617_S_NODE_6032_length_225_cov_2.467033_g5944_i0 PRJNA1054617 6032 225 2.467033 5.55082425 Eukaryota 2759 Plants Plants 52.8 0.02   NTclustered gi|2810943382|gb|CP168780.1| 3750 g5944 i0 96.774 0.8 31 1 14 0 193 223 27380089 27380059 Malus domestica cultivar Golden Delicious chromosome 16 blastn 180 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Malus Malus domestica
16313695 16313695 PRJNA1054617_S_NODE_6493_length_219_cov_0.954545_g6405_i0 PRJNA1054617 6493 219 0.954545 2.09045355 Fagaceae 3503 Plants Plants 357 3.67e-94   NTclustered gi|19919548|gb|AF479107.1| 28927 g6405 i0 98.515 92.2511415525114 202 3 92 0 18 219 77 278 Chrysolepis sempervirens 26S ribosomal RNA gene, complete sequence blastn 20203 357 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Chrysolepis Chrysolepis sempervirens
16753443 16753443 PRJNA1054617_S_NODE_7754_length_203_cov_2.225000_g7666_i0 PRJNA1054617 7754 203 2.225 4.51675 Cannabis sativa 3483 Plants Plants 52.8 0.018   NTclustered gi|2748541476|gb|CP158647.1| 3483 g7666 i0 100 0.137931034482759 28 0 14 0 5 32 69990848 69990875 Cannabis sativa cultivar ERBxHO40_23 chromosome 4 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
21413334 21413334 PRJNA1054617_S_NODE_8937_length_192_cov_1.234899_g8849_i0 PRJNA1054617 8937 192 1.234899 2.37100608 Eukaryota 2759 Plants Plants 52.8 0.017   NTclustered gi|1963662117|emb|LR861820.1| 4565 g8849 i0 100 0.4375 28 0 15 0 1 28 6 33 Triticum aestivum mRNA for NB-LRR protein (Pm1 gene), cultivar Axminster, allele Pm1a blastn 84 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
22688089 22688089 PRJNA1054617_S_NODE_4618_length_250_cov_3.536232_g4530_i0 PRJNA1054617 4618 250 3.536232 8.84058 root 1 Root_unresolved Root_unresolved 52.8 0.023   NTclustered gi|2835530364|dbj|LC777194.1| 3329 g4530 i0 100 0.224 28 0 11 0 1 28 29 56 Picea abies Pa-Kumamoto-2022 PaMurA mRNA for UDP-N-acetylglucosamine1-carboxyvinyltransferase, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
25237486 25237486 PRJNA1054617_S_NODE_10700_length_178_cov_2.014815_g10612_i0 PRJNA1054617 10700 178 2.014815 3.5863707 Eukaryota 2759 Plants Plants 52.8 0.015   NTclustered gi|1963662117|emb|LR861820.1| 4565 g10612 i0 100 0.471910112359551 28 0 16 0 1 28 6 33 Triticum aestivum mRNA for NB-LRR protein (Pm1 gene), cultivar Axminster, allele Pm1a blastn 84 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;