RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1054617" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1054617 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4002970 4002970 PRJNA1054617_S_NODE_5824_length_228_cov_2.983784_g5736_i0 PRJNA1054617 5824 228 2.983784 6.80302752 Mycoplasma ovis 171632 Bacteria Bacteria 231 2.43e-56   NTclustered gi|566058721|gb|CP006935.1| 1415773 g5736 i0 85.333 24.0175438596491 225 32 98 1 2 225 697133 697357 Mycoplasma ovis str. Michigan, complete genome blastn 5476 231 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma ovis
10379829 10379829 PRJNA1054617_S_NODE_8949_length_192_cov_0.926174_g8861_i0 PRJNA1054617 8949 192 0.926174 1.77825408 Mycoplasma wenyonii 65123 Bacteria Bacteria 311 2.47e-80   NTclustered gi|395455868|gb|CP003703.1| 1197325 g8861 i0 95.833 1 192 8 100 0 1 192 124040 123849 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 192 311 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
12930209 12930209 PRJNA1054617_S_NODE_10431_length_180_cov_1.927007_g10343_i0 PRJNA1054617 10431 180 1.927007 3.4686126 Mycoplasma wenyonii 65123 Bacteria Bacteria 309 8.21e-80   NTclustered gi|395455868|gb|CP003703.1| 1197325 g10343 i0 97.765 0.994444444444444 179 4 99 0 2 180 543780 543958 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 179 309 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
16753431 16753431 PRJNA1054617_S_NODE_4694_length_249_cov_1.786408_g4606_i0 PRJNA1054617 4694 249 1.786408 4.44815592 Mycoplasma wenyonii 65123 Bacteria Bacteria 444 3.18e-120   NTclustered gi|395455868|gb|CP003703.1| 1197325 g4606 i0 98.795 1.97590361445783 249 3 100 0 1 249 4219 4467 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 492 444 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
18028328 18028328 PRJNA1054617_S_NODE_5795_length_229_cov_1.236559_g5707_i0 PRJNA1054617 5795 229 1.236559 2.83172011 Mycoplasma wenyonii 65123 Bacteria Bacteria 318 1.82e-82   NTclustered gi|395455868|gb|CP003703.1| 1197325 g5707 i0 91.703 2.00436681222707 229 19 100 0 1 229 196350 196122 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 459 318 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;