RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1054617" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1054617 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4839306 4839306 PRJNA1054617_S_NODE_9124_length_190_cov_2.503401_g9036_i0 PRJNA1054617 9124 190 2.503401 4.7564619 Anaerocolumna 1843210 Bacteria Bacteria 351 1.4399999999999997e-92   NTclustered gi|1886840841|dbj|AP023368.1| 1727145 g9036 i0 100 456.136842105263 190 0 100 0 1 190 14715 14526 Anaerocolumna chitinilytica DNA, complete genome blastn 86666 351 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Anaerocolumna chitinilytica
10379778 10379778 PRJNA1054617_S_NODE_13789_length_160_cov_1.179487_g13701_i0 PRJNA1054617 13789 160 1.179487 1.8871792 Lacrimispora sp. HJ-01 3375704 Bacteria Bacteria 296 5.55e-76   NTclustered gi|2852291485|gb|CP173277.1| 3375704 g13701 i0 100 438.88125 160 0 100 0 1 160 4074131 4074290 Lacrimispora sp. HJ-01 chromosome, complete genome blastn 70221 296 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Lacrimispora sp. HJ-01
12490127 12490127 PRJNA1054617_S_NODE_15150_length_154_cov_1.657658_g15062_i0 PRJNA1054617 15150 154 1.657658 2.55279332 FCB group 1783270 Bacteria Bacteria 285 1.14e-72   NTclustered gi|2800799246|gb|CP093959.1| 1358 g15062 i0 100 527 154 0 100 0 1 154 523180 523333 Lactococcus lactis strain FAM 17919 chromosome, complete genome blastn 81158 285 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis
13764605 13764605 PRJNA1054617_S_NODE_2071_length_343_cov_1.500000_g1983_i0 PRJNA1054617 2071 343 1.5 5.145 Bacillati 1783272 Bacteria Bacteria 529 1.2299999999999994e-145   NTclustered gi|1848626851|gb|CP054017.1| 1292 g1983 i0 94.318 491.571428571429 352 9 99 5 1 342 961730 961380 Staphylococcus warneri strain FDAARGOS_754 chromosome, complete genome blastn 168609 534 0.99063670411985 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus warneri
18862829 18862829 PRJNA1054617_S_NODE_8115_length_199_cov_2.814103_g8027_i0 PRJNA1054617 8115 199 2.814103 5.60006497 root 1 Root_unresolved Root_unresolved 368 1.51e-97   NTclustered gi|297343261|gb|HM188414.1| 1582 g8027 i0 100 120 199 0 100 0 1 199 847 649 Lactobacillus casei strain LRSL2 16S ribosomal RNA gene, partial sequence blastn 23880 368 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei
18862833 18862833 PRJNA1054617_S_NODE_8515_length_196_cov_1.202614_g8427_i0 PRJNA1054617 8515 196 1.202614 2.35712344 Bacillus 1386 Bacteria Bacteria 54.7 0.005   NTclustered gi|2769860694|gb|CP160224.1| 1408 g8427 i0 92.105 3.97959183673469 38 3 19 0 2 39 2682594 2682557 Bacillus pumilus strain JJ950 chromosome, complete genome blastn 780 54.7 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus pumilus
22688118 22688118 PRJNA1054617_S_NODE_9038_length_191_cov_1.243243_g8950_i0 PRJNA1054617 9038 191 1.243243 2.37459413 Bacillati 1783272 Bacteria Bacteria 353 4.02e-93   NTclustered gi|1848626851|gb|CP054017.1| 1292 g8950 i0 100 460.099476439791 191 0 100 0 1 191 1219551 1219361 Staphylococcus warneri strain FDAARGOS_754 chromosome, complete genome blastn 87879 353 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus warneri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;