RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1054617" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1054617 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1451154 1451154 PRJNA1054617_S_NODE_422_length_605_cov_5.298932_g349_i0 PRJNA1054617 422 605 5.298932 32.0585386 Neovahlkampfia damariscottae 166956 Heterolobosea other_Eukaryota 320 1.4899999999999995e-82   NTclustered gi|2874368068|gb|PQ819792.1| 166956 g349 i0 89.37 40.3818181818182 254 27 42 0 1 254 1303 1050 Neovahlkampfia damariscottae strain CCAP:1588/7 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 24431 320 1 Eukaryota Discoba   Heterolobosea     Neovahlkampfiidae Neovahlkampfia Neovahlkampfia damariscottae
4002936 4002936 PRJNA1054617_S_NODE_11024_length_176_cov_1.729323_g10936_i0 PRJNA1054617 11024 176 1.729323 3.04360848 Neovahlkampfia nana 1869201 Heterolobosea other_Eukaryota 270 3.77e-68   NTclustered gi|1042160994|dbj|LC126953.1| 1869201 g10936 i0 94.318 101.159090909091 176 10 100 0 1 176 532 707 Neovahlkampfia nana gene for 18S ribosomal RNA, partial sequence, isolate: III_02 blastn 17804 270 1 Eukaryota Discoba   Heterolobosea     Neovahlkampfiidae Neovahlkampfia Neovahlkampfia nana
24402471 24402471 PRJNA1054617_S_NODE_15040_length_154_cov_7.459459_g14952_i0 PRJNA1054617 15040 154 7.459459 11.48756686 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 52.8 0.013   NTclustered gi|1624744913|ref|XM_029023385.1| 67003 g14952 i0 100 0.545454545454545 28 0 18 0 123 150 1431 1404 Trypanosoma theileri apurinic/apyrimidinic endonuclease (TM35_000063480), partial mRNA blastn 84 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;