RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1050291" and tax_kingdom = "Shotokuvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 4 ✖

bioproject 1

  • PRJNA1050291 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3561809 3561809 PRJNA1050291_P_NODE_4543_length_765_cov_3.319364_g3658_i0 PRJNA1050291 4543 765 3.319364 25.3931346 Alphapolyomavirus 1891713 Viruses Viruses 1413 0   NTclustered gi|410060813|gb|JX045708.1| 493803 g3658 i0 100 87.7385620915033 765 0 100 0 1 765 47 811 Merkel cell polyomavirus isolate MKL-2, partial genome blastn 67120 1413 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Alphapolyomavirus Alphapolyomavirus quintihominis
12490015 12490015 PRJNA1050291_P_NODE_8990_length_420_cov_2.968300_g8099_i0 PRJNA1050291 8990 420 2.9683 12.46686 Alphapolyomavirus 1891713 Viruses Viruses 776 0   NTclustered gi|207705693|gb|FJ173808.1| 493803 g8099 i0 100 100 420 0 100 0 1 420 1227 808 Merkel cell polyomavirus isolate 345 truncated large T antigen gene, partial cds; and small T antigen gene, complete cds blastn 42000 776 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Alphapolyomavirus Alphapolyomavirus quintihominis
16752734 16752734 PRJNA1050291_P_NODE_10454_length_373_cov_1.443333_g9563_i0 PRJNA1050291 10454 373 1.443333 5.38363209 Betapapillomavirus 2 333924 Viruses Viruses 603 7.809999999999998e-168   NTclustered gi|290964861|emb|FN677756.1| 743812 g9563 i0 99.399 15.9356568364611 333 1 89 1 1 333 5585 5916 Human papillomavirus type 151, complete genome, isolate SIBX2 blastn 5944 603 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 2
20137553 20137553 PRJNA1050291_P_NODE_9436_length_404_cov_1.990937_g8545_i0 PRJNA1050291 9436 404 1.990937 8.04338548 Alphapolyomavirus 1891713 Viruses Viruses 734 0   NTclustered gi|410060816|gb|JX045709.1| 493803 g8545 i0 99.504 91.6460396039604 403 2 99 0 1 403 5259 4857 Merkel cell polyomavirus isolate MS-1, partial genome blastn 37025 734 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Alphapolyomavirus Alphapolyomavirus quintihominis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;