RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1050291" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA1050291 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7828647 7828647 PRJNA1050291_P_NODE_21947_length_231_cov_2.189873_g21056_i0 PRJNA1050291 21947 231 2.189873 5.05860663 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 427 2.9399999999999998e-115   NTclustered gi|336478352|emb|FR872580.1| 765952 g21056 i0 100 1 231 0 100 0 1 231 1407857 1408087 Parachlamydia acanthamoebae UV-7, complete genome blastn 231 427 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
9103483 9103483 PRJNA1050291_P_NODE_13988_length_299_cov_1.623894_g13097_i0 PRJNA1050291 13988 299 1.623894 4.85544306 Mucisphaera calidilacus 2527982 Bacteria Bacteria 52.8 0.028   NTclustered gi|1712644202|gb|CP036280.1| 2527982 g13097 i0 100 0.0936454849498328 28 0 9 0 49 76 1244494 1244467 Mucisphaera calidilacus strain Pan265 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae Mucisphaera Mucisphaera calidilacus
10379451 10379451 PRJNA1050291_P_NODE_4929_length_708_cov_4.817323_g4041_i0 PRJNA1050291 4929 708 4.817323 34.10664684 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 1303 0   NTclustered gi|336478352|emb|FR872580.1| 765952 g4041 i0 99.859 1 708 1 100 0 1 708 137283 137990 Parachlamydia acanthamoebae UV-7, complete genome blastn 708 1303 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
12490012 12490012 PRJNA1050291_P_NODE_8830_length_426_cov_5.158640_g7939_i0 PRJNA1050291 8830 426 5.15864 21.9758064 Parachlamydia 83551 Bacteria Bacteria 787 0   NTclustered gi|589811296|dbj|AB812094.1| 83552 g7939 i0 100 113.800469483568 426 0 100 0 1 426 551 126 Parachlamydia acanthamoebae gene for 16S ribosomal RNA, partial sequence, strain: Leol blastn 48479 787 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
16752905 16752905 PRJNA1050291_P_NODE_17914_length_254_cov_2.121547_g17023_i0 PRJNA1050291 17914 254 2.121547 5.38872938 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 270 5.8499999999999984e-68   NTclustered gi|336478352|emb|FR872580.1| 765952 g17023 i0 99.329 1.02362204724409 149 1 100 0 106 254 2118128 2117980 Parachlamydia acanthamoebae UV-7, complete genome blastn 260 270 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
19301553 19301553 PRJNA1050291_P_NODE_10596_length_368_cov_2.410169_g9705_i0 PRJNA1050291 10596 368 2.410169 8.86942192 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 680 0   NTclustered gi|336478352|emb|FR872580.1| 765952 g9705 i0 100 1 368 0 100 0 1 368 2513245 2512878 Parachlamydia acanthamoebae UV-7, complete genome blastn 368 680 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
20577208 20577208 PRJNA1050291_P_NODE_4937_length_707_cov_6.397476_g4049_i0 PRJNA1050291 4937 707 6.397476 45.23015532 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 1306 0   NTclustered gi|336478352|emb|FR872580.1| 765952 g4049 i0 100 1.3041018387553 707 0 100 0 1 707 2517991 2518697 Parachlamydia acanthamoebae UV-7, complete genome blastn 922 1306 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;