RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1047749" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047749 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1449582 1449582 PRJNA1047749_P_NODE_17082_length_312_cov_5.121339_g16815_i0 PRJNA1047749 17082 312 5.121339 15.97857768 Desulfolutivibrio sulfoxidireducens 2773299 Bacteria Bacteria 126 1.69e-24   NTclustered gi|1863429635|gb|CP045508.1| 2773299 g16815 i0 83.582 10.8076923076923 134 22 43 0 162 295 867518 867651 Desulfolutivibrio sulfoxidireducens strain DSM 107105 chromosome, complete genome blastn 3372 126 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfolutivibrio Desulfolutivibrio sulfoxidireducens
23127255 23127255 PRJNA1047749_P_NODE_23079_length_301_cov_7.245614_g22812_i0 PRJNA1047749 23079 301 7.245614 21.80929814 Nitratidesulfovibrio sp. HK-II 2009266 Bacteria Bacteria 67.6 1e-6   NTclustered gi|2791413552|dbj|AP036014.1| 2009266 g22812 i0 95.349 0.142857142857143 43 1 14 1 78 119 270073 270115 Nitratidesulfovibrio sp. HK-II DNA, complete genome blastn 43 67.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio sp. HK-II

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;