RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1047749" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047749 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5277708 5277708 PRJNA1047749_P_NODE_19045_length_312_cov_3.414226_g18778_i0 PRJNA1047749 19045 312 3.414226 10.65238512 Campylobacter showae 204 Bacteria Bacteria 449 8.85e-122   NTclustered gi|1483583525|emb|LT631449.1| 204 g18778 i0 92.81 8.26282051282051 306 17 98 2 4 308 1809102 1808801 Campylobacter showae strain 129_VTPPs genome assembly, chromosome: I blastn 2578 449 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
11214088 11214088 PRJNA1047749_P_NODE_5289_length_523_cov_6.111111_g5038_i0 PRJNA1047749 5289 523 6.111111 31.96111053 root 1 Root_unresolved Root_unresolved 948 0   NTclustered gi|1226876681|gb|CP022559.1| 197 g5038 i0 100 99.2141491395793 513 0 98 0 1 513 697917 698429 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 51889 948 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
12929023 12929023 PRJNA1047749_P_NODE_42411_length_243_cov_4.058824_g42144_i0 PRJNA1047749 42411 243 4.058824 9.86294232 Candidatus Sulfuricurvum sp. RIFRC-1 1249480 Bacteria Bacteria 134 7.6e-27   NTclustered gi|410997208|gb|CP003921.1| 1249480 g42144 i0 92.473 0.382716049382716 93 7 38 0 93 185 1438 1346 Candidatus Sulfuricurvum sp. RIFRC-1 plasmid, complete sequence blastn 93 134 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Candidatus Sulfuricurvum sp. RIFRC-1
21412545 21412545 PRJNA1047749_P_NODE_44577_length_236_cov_2.656442_g44310_i0 PRJNA1047749 44577 236 2.656442 6.26920312 Pseudomonadati 3379134 Bacteria Bacteria 436 4.999999999999999e-118   NTclustered gi|1226876681|gb|CP022559.1| 197 g44310 i0 100 100 236 0 100 0 1 236 701375 701140 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 23600 436 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
22687161 22687161 PRJNA1047749_P_NODE_3458_length_618_cov_6.310092_g3221_i0 PRJNA1047749 3458 618 6.310092 38.99636856 root 1 Root_unresolved Root_unresolved 1142 0   NTclustered gi|1226876681|gb|CP022559.1| 197 g3221 i0 100 101 618 0 100 0 1 618 699062 698445 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 62418 1142 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;