RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1047749" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047749 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
175046 175046 PRJNA1047749_P_NODE_26921_length_298_cov_3.084444_g26654_i0 PRJNA1047749 26921 298 3.084444 9.19164312 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 222 1.99e-53   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g26654 i0 93.878 0.493288590604027 147 9 49 0 5 151 298746 298892 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 147 222 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
2725432 2725432 PRJNA1047749_P_NODE_20343_length_312_cov_2.719665_g20076_i0 PRJNA1047749 20343 312 2.719665 8.4853548 Bdellovibrio sp. ZAP7 2231053 Bacteria Bacteria 152 2.8e-32   NTclustered gi|1700693790|gb|CP030082.1| 2231053 g20076 i0 87.692 33.7820512820513 130 16 42 0 162 291 2182057 2181928 Bdellovibrio sp. ZAP7 chromosome, complete genome blastn 10540 152 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ZAP7
4001830 4001830 PRJNA1047749_P_NODE_47344_length_226_cov_4.339869_g47077_i0 PRJNA1047749 47344 226 4.339869 9.80810394 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 305 1.4e-78   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g47077 i0 91.818 0.97345132743362806 220 17 97 1 8 226 2042920 2043139 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 220 305 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
16312978 16312978 PRJNA1047749_P_NODE_46013_length_231_cov_2.468354_g45746_i0 PRJNA1047749 46013 231 2.468354 5.70189774 Bdellovibrio 958 Bacteria Bacteria 318 1.84e-82   NTclustered gi|2801803968|gb|CP169237.1| 959 g45746 i0 92.377 17.4458874458874 223 17 97 0 9 231 3061827 3061605 Bdellovibrio bacteriovorus strain Bd3 chromosome, complete genome blastn 4030 318 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;