RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1047551" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1047551 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4001209 4001209 PRJNA1047551_S_NODE_7784_length_183_cov_11.831081_g7657_i0 PRJNA1047551 7784 183 11.831081 21.65087823 uncultured Rhizophydiales 687209 Fungi Fungi 272 1.1e-68   NTclustered gi|2532153749|gb|OR239103.1| 687209 g7657 i0 95.858 93.431693989071 169 6 92 1 1 168 328 160 Uncultured Rhizophydiales clone Chytrid_sample_69 large subunit ribosomal RNA gene, partial sequence blastn 17098 272 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales
5277536 5277536 PRJNA1047551_S_NODE_8305_length_179_cov_5.013889_g8178_i0 PRJNA1047551 8305 179 5.013889 8.97486131 Fimicolochytrium jonesii 1396493 Fungi Fungi 52.8 0.015   NTclustered gi|2432081761|ref|XM_053070567.1| 1396493 g8178 i0 100 0.156424581005587 28 0 16 0 71 98 1470 1443 Fimicolochytrium jonesii major facilitator superfamily domain-containing protein (EV422DRAFT_532878), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;