RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1047551" and tax_phylum = "Acanthocephala"

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tax_superkingdom 1

tax_phylum 1

  • Acanthocephala · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1047551 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15477461 15477461 PRJNA1047551_S_NODE_7113_length_189_cov_4.220779_g6986_i0 PRJNA1047551 7113 189 4.220779 7.97727231 Echinorhynchus truttae 185727 Acanthocephala other_Eukaryota 76.8 9.62e-10   NTclustered gi|218117098|emb|AM980979.1| 185727 g6986 i0 81.053 1.04761904761905 95 18 50 0 30 124 355 449 Echinorhynchus truttae partial mRNA for 60S ribosomal protein L23a, (RPL23a gene) blastn 198 76.8 1 Eukaryota Opisthokonta Metazoa Acanthocephala Palaeacanthocephala Echinorhynchida Echinorhynchidae Echinorhynchus Echinorhynchus truttae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;